Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ccmB gene

Properties
Regulog: NarP - Vibrionales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Built upon 135 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Photobacterium profundum SS9
Position: -156
Score: 3.98127
Sequence: TTTTACTATAGGGGTA
Locus tag: PBPRA0948
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: PBPRA0949
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: PBPRA0950
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: PBPRA0951
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: PBPRA0952
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: PBPRA0953
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: PBPRA0954
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: PBPRA0955
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmE-ccmF-ccmG-ccmH-ccmH -156 4 TTTTACTATAGGGGTA PBPRA0948
Vibrio cholerae O1 biovar eltor str. N16961
Position: -144
Score: 4.42428
Sequence: TAACTACAAAGGGTTA
Locus tag: VC2057
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VC2056
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VC2055
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VC2054
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VC2053
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VC2052
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VC2051
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG -144 4.4 TAACTACAAAGGGTTA VC2057
Vibrio fischeri ES114
Position: -192
Score: 4.81165
Sequence: TACCTACAAAGTGGTA
Locus tag: VF_1824
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VF_1823
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VF_1822
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VF_1821
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VF_1820
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VF_1819
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VF_1818
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VF_1817
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VF_1816
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -192 4.8 TACCTACAAAGTGGTA VF_1824
Vibrio harveyi ATCC BAA-1116
Position: -146
Score: 3.89761
Sequence: TAATCACTTATGGTTA
Locus tag: VIBHAR_03135
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VIBHAR_03134
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VIBHAR_03133
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VIBHAR_03132
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VIBHAR_03131
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VIBHAR_03130
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VIBHAR_03129
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VIBHAR_03128
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VIBHAR_03127
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -146 3.9 TAATCACTTATGGTTA VIBHAR_03135
Vibrio parahaemolyticus RIMD 2210633
Position: -146
Score: 3.88445
Sequence: TAGCCACTTATGGTTA
Locus tag: VP2223
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VP2222
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VP2221
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VP2220
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VP2219
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VP2218
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VP2217
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VP2216
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VP2215
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -146 3.9 TAGCCACTTATGGTTA VP2223
Vibrio salmonicida LFI1238
Position: -190
Score: 4.8774
Sequence: TACCCATAAGGTGGTA
Locus tag: VSAL_I2281
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VSAL_I2280
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VSAL_I2279
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VSAL_I2278
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VSAL_I2277
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VSAL_I2276
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VSAL_I2275
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VSAL_I2274
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VSAL_I2273
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -190 4.9 TACCCATAAGGTGGTA VSAL_I2281
Vibrio shilonii AK1
Position: -145
Score: 5.05627
Sequence: TACCACTTTATGGGTA
Locus tag: VSAK1_03174
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VSAK1_03179
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VSAK1_03184
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VSAK1_03189
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VSAK1_03194
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VSAK1_03199
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VSAK1_03204
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VSAK1_03209
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VSAK1_03214
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -145 5.1 TACCACTTTATGGGTA VSAK1_03174
Vibrio vulnificus CMCP6
Position: -146
Score: 4.32605
Sequence: TCACTCTATAGAGGTA
Locus tag: VV1_1961
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VV1_1962
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VV1_1963
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VV1_1964
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VV1_1965
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VV1_1966
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VV1_1967
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VV1_1968
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VV1_1969
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -146 4.3 TCACTCTATAGAGGTA VV1_1961
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