Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nirD gene

Properties
Regulog: NarP - Vibrionales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Built upon 135 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Photobacterium profundum SS9
Position: -106
Score: 5.06173
Sequence: TACCCCTTTAGGGCTA
Locus tag: PBPRA1428
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: PBPRA1427
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: PBPRA1426
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: PBPRA1425
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB-nirD-nirC-cysG -106 5.1 TACCCCTTTAGGGCTA PBPRA1428
Vibrio fischeri ES114
Position: -115
Score: 4.68903
Sequence: TACCACCTTAGAGCTA
Locus tag: VF_0776
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VF_0775
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VF_0774
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VF_0773
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB-nirD-nirC-cysG -115 4.7 TACCACCTTAGAGCTA VF_0776
Vibrio parahaemolyticus RIMD 2210633
Position: -108
Score: 4.13577
Sequence: TACCCCTTTAGGGTAG
Position: -18
Score: 4.67024
Sequence: TAACCCTTAGGAAGTA
Locus tag: VPA0987
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VPA0986
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VPA0985
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VPA0984
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB-nirD-nirC-cysG -108 4.1 TACCCCTTTAGGGTAG VPA0987
-18 4.7 TAACCCTTAGGAAGTA
Vibrio shilonii AK1
Position: -108
Score: 3.99295
Sequence: TACCACTTTAGAGTAG
Position: -18
Score: 4.39492
Sequence: TAACACTTAGGTATTA
Locus tag: VSAK1_05765
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_05770
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_05775
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VSAK1_05780
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB-nirD-nirC-cysG -108 4 TACCACTTTAGAGTAG VSAK1_05765
-18 4.4 TAACACTTAGGTATTA
Vibrio splendidus LGP32
Position: -109
Score: 4.13577
Sequence: TACCCCTTTAGGGTAG
Locus tag: VS_II0668
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VS_II0669
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VS_II0670
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VS_II0671
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB-nirD-nirC-cysG -109 4.1 TACCCCTTTAGGGTAG VS_II0668
Vibrio vulnificus CMCP6
Position: -106
Score: 4.13577
Sequence: TACCCCTTTAGGGTAG
Position: -18
Score: 4.67024
Sequence: TAACCCTTAGGAAGTA
Locus tag: VV20370
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VV20369
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VV20368
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VV20367
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB-nirD-nirC-cysG -106 4.1 TACCCCTTTAGGGTAG VV20370
-18 4.7 TAACCCTTAGGAAGTA
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