Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing omcA gene

Properties
Regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Built upon 505 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -297
Score: 5.57077
Sequence: TAACGATAATAATTTTCAATT
Position: -150
Score: 4.68402
Sequence: AAATCAGACTAATTATTAATA
Locus tag: Sama_1213
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Sama_1212
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Sama_1211
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Sama_1210
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -297 5.6 TAACGATAATAATTTTCAATT Sama_1213
-150 4.7 AAATCAGACTAATTATTAATA
Shewanella baltica OS155
Position: -64
Score: 5.46855
Sequence: TAATGAGATTTATTCTTATCT
Locus tag: Sbal_1590
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA -64 5.5 TAATGAGATTTATTCTTATCT Sbal_1590
Shewanella halifaxensis HAW-EB4
Position: -336
Score: 5.7261
Sequence: AAACGATAATAATTTTCAATT
Locus tag: Shal_2778
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Shal_2779
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Shal_2780
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shal_2781
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -336 5.7 AAACGATAATAATTTTCAATT Shal_2778
Shewanella loihica PV-4
Position: -291
Score: 5.7261
Sequence: AAACGATAATAATTTTCAATT
Position: -222
Score: 5.82512
Sequence: AAATGAGAACCATTTTCATTG
Locus tag: Shew_2519
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Shew_2520
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Shew_2521
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shew_2522
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -291 5.7 AAACGATAATAATTTTCAATT Shew_2519
-222 5.8 AAATGAGAACCATTTTCATTG
Shewanella oneidensis MR-1
Position: -64
Score: 5.55222
Sequence: TAATGAGATTTGTTCTTATTT
Locus tag: SO1779
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA -64 5.6 TAATGAGATTTGTTCTTATTT SO1779
Shewanella pealeana ATCC 700345
Position: -317
Score: 5.7261
Sequence: AAACGATAATAATTTTCAATT
Position: -252
Score: 5.07715
Sequence: AATTAAGAATGGTTACTATTT
Locus tag: Spea_2692
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Spea_2693
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Spea_2694
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Spea_2695
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -317 5.7 AAACGATAATAATTTTCAATT Spea_2692
-252 5.1 AATTAAGAATGGTTACTATTT
Shewanella piezotolerans WP3
Position: -339
Score: 5.7261
Sequence: AAACGATAATAATTTTCAATT
Position: -239
Score: 5.3036
Sequence: AAATAGTAATGGTTATTATTT
Locus tag: swp_3272
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: swp_3275
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -339 5.7 AAACGATAATAATTTTCAATT swp_3272
-239 5.3 AAATAGTAATGGTTATTATTT
Shewanella sediminis HAW-EB3
Position: -322
Score: 5.56032
Sequence: AAACGAGAATAGTTTTCAATT
Position: -229
Score: 4.8816
Sequence: AGATGAGAATGATTATCGCTC
Position: -110
Score: 4.78379
Sequence: AGATAAAAATGTTACTCATTT
Locus tag: Ssed_1530
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Ssed_1529
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Ssed_1528
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Ssed_1527
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -322 5.6 AAACGAGAATAGTTTTCAATT Ssed_1530
-229 4.9 AGATGAGAATGATTATCGCTC
-110 4.8 AGATAAAAATGTTACTCATTT
Shewanella sp ANA-3
Position: -64
Score: 5.29992
Sequence: TAATGAGATTTATTCTTATTC
Locus tag: Shewana3_2675
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA -64 5.3 TAATGAGATTTATTCTTATTC Shewana3_2675
Shewanella sp MR-4
Position: -64
Score: 5.70755
Sequence: TAATGAGATTTATTCTTATTT
Locus tag: Shewmr4_2509
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA -64 5.7 TAATGAGATTTATTCTTATTT Shewmr4_2509
Shewanella sp MR-7
Position: -64
Score: 5.70755
Sequence: TAATGAGATTTATTCTTATTT
Locus tag: Shewmr7_2577
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA -64 5.7 TAATGAGATTTATTCTTATTT Shewmr7_2577
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