Orthologous regulated operons containing mmsB gene

Properties
Regulog:	Crp - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria

Built upon 2713 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -67 Score: 4.10177 Sequence: AACCGCGACCGCCATCACATTT Locus tag: Sama_1375 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: Sama_1376 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Sama_1377 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Sama_1378 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Sama_1379 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: Sama_1380 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Sama_1381 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG	-67	4.1	AACCGCGACCGCCATCACATTT	Sama_1375
Shewanella halifaxensis HAW-EB4
Position: -138 Score: 4.15147 Sequence: AATGTTGAGCAAGATCACACTT Locus tag: Shal_2878 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: Shal_2877 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Shal_2876 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Shal_2875 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Shal_2874 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: Shal_2873 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Shal_2872 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG	-138	4.2	AATGTTGAGCAAGATCACACTT	Shal_2878
Shewanella loihica PV-4
Position: -75 Score: 4.18355 Sequence: TTATTTGAACATGATCACGCTT Locus tag: Shew_1667 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: Shew_1668 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Shew_1669 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Shew_1670 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Shew_1671 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: Shew_1672 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Shew_1673 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG	-75	4.2	TTATTTGAACATGATCACGCTT	Shew_1667
Shewanella pealeana ATCC 700345
Position: -138 Score: 4.52681 Sequence: AATATTGAGCAAGATCACATTT Locus tag: Spea_2783 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: Spea_2782 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Spea_2781 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Spea_2780 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Spea_2779 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: Spea_2778 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Spea_2777 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Locus tag: Spea_2776 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG-fabG	-138	4.5	AATATTGAGCAAGATCACATTT	Spea_2783
Shewanella piezotolerans WP3
Position: -175 Score: 4.43722 Sequence: AATGTTGAGCGAGATCACATTT Locus tag: swp_3387 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: swp_3386 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: swp_3385 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: swp_3384 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: swp_3383 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: swp_3382 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: swp_3381 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG	-175	4.4	AATGTTGAGCGAGATCACATTT	swp_3387
Shewanella sediminis HAW-EB3
Position: -92 Score: 4.26425 Sequence: TTAATTGAGCAAGATCACACTT Locus tag: Ssed_1473 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: Ssed_1474 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Ssed_1475 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Ssed_1476 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Ssed_1477 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: Ssed_1478 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Ssed_1479 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG	-92	4.3	TTAATTGAGCAAGATCACACTT	Ssed_1473