Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing cydD gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -137
Score: 4.17848
Sequence: TTTTTTGATCCAGCGCAAATTC
Position: -118
Score: 4.15489
Sequence: TTCTGTGAATCCCCTAACAAAT
Locus tag: Sama_2679
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sama_2678
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -137 4.2 TTTTTTGATCCAGCGCAAATTC Sama_2679
-118 4.2 TTCTGTGAATCCCCTAACAAAT
Shewanella baltica OS155
Position: -170
Score: 4.32667
Sequence: TTTTGTGAGTCTGCTAGCAAAA
Locus tag: Sbal_3463
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sbal_3462
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Sbal_3461
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -170 4.3 TTTTGTGAGTCTGCTAGCAAAA Sbal_3463
Shewanella frigidimarina NCIMB 400
Position: -214
Score: 4.22584
Sequence: TATTGTGTTGCAATTAACAATG
Position: -104
Score: 4.96667
Sequence: AAATGTGAATCAGATAACATTT
Locus tag: Sfri_3213
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sfri_3212
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -214 4.2 TATTGTGTTGCAATTAACAATG Sfri_3213
-104 5 AAATGTGAATCAGATAACATTT
Shewanella halifaxensis HAW-EB4
Position: -233
Score: 4.07345
Sequence: TTTATTGATCTAGCTCAATTTT
Position: -214
Score: 4.8735
Sequence: TTTTGTGAGTCCGATAACATTT
Locus tag: Shal_3589
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shal_3588
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -233 4.1 TTTATTGATCTAGCTCAATTTT Shal_3589
-214 4.9 TTTTGTGAGTCCGATAACATTT
Shewanella loihica PV-4
Position: -129
Score: 4.51623
Sequence: TTTTTTGATCTAGCTCAATTTT
Position: -110
Score: 4.79714
Sequence: TTTTGTGAGCCTAATAACAATT
Locus tag: Shew_0613
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shew_0614
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -129 4.5 TTTTTTGATCTAGCTCAATTTT Shew_0613
-110 4.8 TTTTGTGAGCCTAATAACAATT
Shewanella oneidensis MR-1
Position: -191
Score: 4.36443
Sequence: TTTATTGATCAGCATCGCATTT
Locus tag: SO3780
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: SO3779
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: SO3778
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -191 4.4 TTTATTGATCAGCATCGCATTT SO3780
Shewanella pealeana ATCC 700345
Position: -185
Score: 4.07345
Sequence: TTTATTGATCTAGCTCAATTTT
Position: -166
Score: 4.44164
Sequence: TTTTGTGAGTCCGATAGCAAAT
Locus tag: Spea_3494
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Spea_3493
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -185 4.1 TTTATTGATCTAGCTCAATTTT Spea_3494
-166 4.4 TTTTGTGAGTCCGATAGCAAAT
Shewanella putrefaciens CN-32
Position: -169
Score: 4.74203
Sequence: TTTTGTGAATCGGTTAACAAAA
Locus tag: Sputcn32_3106
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sputcn32_3105
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Sputcn32_3104
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -169 4.7 TTTTGTGAATCGGTTAACAAAA Sputcn32_3106
Shewanella sediminis HAW-EB3
Position: -139
Score: 4.09363
Sequence: AAAATTGATCTAGCTCAATTTT
Position: -120
Score: 4.68176
Sequence: TTTTGTGAATCCGTTAACAATT
Locus tag: Ssed_3849
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Ssed_3848
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -139 4.1 AAAATTGATCTAGCTCAATTTT Ssed_3849
-120 4.7 TTTTGTGAATCCGTTAACAATT
Shewanella sp ANA-3
Position: -187
Score: 4.44609
Sequence: TTTATTGATCTTTATCTCATTT
Position: -167
Score: 4.54454
Sequence: TTTTGTGAATAGGCTAACAAAA
Locus tag: Shewana3_0812
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shewana3_0813
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Shewana3_0814
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -187 4.4 TTTATTGATCTTTATCTCATTT Shewana3_0812
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-4
Position: -187
Score: 4.44609
Sequence: TTTATTGATCTTTATCTCATTT
Position: -167
Score: 4.54454
Sequence: TTTTGTGAATAGGCTAACAAAA
Locus tag: Shewmr4_3127
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shewmr4_3126
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Shewmr4_3125
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -187 4.4 TTTATTGATCTTTATCTCATTT Shewmr4_3127
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-7
Position: -187
Score: 4.44609
Sequence: TTTATTGATCTTTATCTCATTT
Position: -167
Score: 4.54454
Sequence: TTTTGTGAATAGGCTAACAAAA
Locus tag: Shewmr7_0840
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shewmr7_0841
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Shewmr7_0842
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -187 4.4 TTTATTGATCTTTATCTCATTT Shewmr7_0840
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp W3-18-1
Position: -169
Score: 4.74203
Sequence: TTTTGTGAATCGGTTAACAAAA
Locus tag: Sputw3181_0838
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sputw3181_0839
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Sputw3181_0840
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
cydD-cydC-cyaB -169 4.7 TTTTGTGAATCGGTTAACAAAA Sputw3181_0838
Shewanella woodyi ATCC 51908
Position: -149
Score: 4.07345
Sequence: TTTATTGATCTAGCTCAATTTT
Position: -130
Score: 4.69465
Sequence: TTTTGTGAATCTCTTAACATTT
Locus tag: Swoo_0710
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Swoo_0711
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD-cydC -149 4.1 TTTATTGATCTAGCTCAATTTT Swoo_0710
-130 4.7 TTTTGTGAATCTCTTAACATTT
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