Orthologous regulated operons containing prmA gene
| Regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -281
Score: 3.93409 Sequence: TTTCGTGATCAGTGTCACTACA
Position: -249
Score: 3.71459 Sequence: CTATTAGACGTAGATCACAAAC
Locus tag: Shal_3900
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Shal_3901
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Shal_3902
Name: fis Funciton: DNA-binding protein Fis |
||||
| prmA- nifR3-fis | -281 | 3.9 | TTTCGTGATCAGTGTCACTACA | Shal_3900 |
| -249 | 3.7 | CTATTAGACGTAGATCACAAAC | ||
| Shewanella loihica PV-4 | ||||
|
Position: -274
Score: 3.82674 Sequence: AAGCGTGAGACACCTCACCCTG
Position: -242
Score: 4.1446 Sequence: ACATTTGACGTCGATCACAAAC
Locus tag: Shew_0331
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Shew_0330
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Shew_0329
Name: fis Funciton: DNA-binding protein Fis |
||||
| prmA- nifR3-fis | -274 | 3.8 | AAGCGTGAGACACCTCACCCTG | Shew_0331 |
| -242 | 4.1 | ACATTTGACGTCGATCACAAAC | ||
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -283
Score: 4.27846 Sequence: TTTCGTGAAGGAACTCACCCTT
Position: -251
Score: 4.13131 Sequence: CTATTAGATCAAGATCACAAAT
Locus tag: Spea_0391
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Spea_0390
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Spea_0389
Name: fis Funciton: DNA-binding protein Fis |
||||
| prmA- nifR3-fis | -283 | 4.3 | TTTCGTGAAGGAACTCACCCTT | Spea_0391 |
| -251 | 4.1 | CTATTAGATCAAGATCACAAAT | ||
| Shewanella piezotolerans WP3 | ||||
|
Position: -286
Score: 4.52099 Sequence: AATCGTGACTTTGCTCACCCTA
Locus tag: swp_0427
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: swp_0426
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: swp_0425
Name: fis Funciton: DNA-binding protein Fis |
||||
| prmA- nifR3-fis | -286 | 4.5 | AATCGTGACTTTGCTCACCCTA | swp_0427 |
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -53
Score: 4.96993 Sequence: TAATGTGATTGGTATTACAATA
Locus tag: Ssed_4117
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Ssed_4118
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Ssed_4119
Name: fis Funciton: DNA-binding protein Fis |
||||
| prmA- nifR3-fis | -53 | 5 | TAATGTGATTGGTATTACAATA | Ssed_4117 |
| Shewanella woodyi ATCC 51908 | ||||
|
Position: -233
Score: 4.48598 Sequence: TTTTTTGAACCACATCACAAAC
Locus tag: Swoo_0506
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Swoo_0505
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Swoo_0504
Name: fis Funciton: DNA-binding protein Fis |
||||
| prmA- nifR3-fis | -233 | 4.5 | TTTTTTGAACCACATCACAAAC | Swoo_0506 |