Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing SO4504 gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -113
Score: 4.02309
Sequence: TTTGATGATCCACTTCAAACTT
Locus tag: Sama_3618
Name: null
Funciton: hypothetical protein
Locus tag: Sama_3617
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sama_3616
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Sama_3615
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sama_3614
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sama_3613
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sama_3612
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sama_3611
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Sama_3618-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -113 4 TTTGATGATCCACTTCAAACTT Sama_3618
Shewanella baltica OS155
Position: -136
Score: 4.16838
Sequence: TTTGATGATCTAGTTCAAACTA
Locus tag: Sbal_4131
Name: null
Funciton: hypothetical protein
Locus tag: Sbal_4132
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sbal_4133
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Sbal_4134
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sbal_4135
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sbal_4136
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sbal_4137
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sbal_4138
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Sbal_4131-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -136 4.2 TTTGATGATCTAGTTCAAACTA Sbal_4131
Shewanella frigidimarina NCIMB 400
Position: -125
Score: 4.18066
Sequence: TTTCGGGATCTAGTTCAAAGTT
Locus tag: Sfri_0052
Name: null
Funciton: hypothetical protein
Locus tag: Sfri_0053
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sfri_0054
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Sfri_0055
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sfri_0056
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sfri_0057
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sfri_0058
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sfri_0059
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Sfri_0052-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -125 4.2 TTTCGGGATCTAGTTCAAAGTT Sfri_0052
Shewanella halifaxensis HAW-EB4
Position: -124
Score: 4.23962
Sequence: ATAGTTGATCTAGTTCAAACTA
Locus tag: Shal_0100
Name: null
Funciton: hypothetical protein
Locus tag: Shal_0101
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shal_0102
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shal_0103
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shal_0104
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shal_0105
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shal_0106
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shal_0107
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shal_0100-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -124 4.2 ATAGTTGATCTAGTTCAAACTA Shal_0100
Shewanella loihica PV-4
Position: -127
Score: 4.07924
Sequence: TTTGATGATCCAGTTCAAACTA
Locus tag: Shew_0054
Name: null
Funciton: hypothetical protein
Locus tag: Shew_0055
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shew_0056
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shew_0057
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shew_0058
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shew_0059
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shew_0060
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shew_0061
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shew_0054-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -127 4.1 TTTGATGATCCAGTTCAAACTA Shew_0054
Shewanella oneidensis MR-1
Position: -130
Score: 3.99462
Sequence: TTTGATGATCCACTTCAAACTA
Locus tag: SO4504
Name: null
Funciton: hypothetical protein
Locus tag: SO4505
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: SO4506
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: SO4507
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: SO4508
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: SO4509
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: SO4510
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: SO4511
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
SO4504-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -130 4 TTTGATGATCCACTTCAAACTA SO4504
Shewanella pealeana ATCC 700345
Position: -123
Score: 4.23962
Sequence: ATAGTTGATCTAGTTCAAACTA
Locus tag: Spea_4142
Name: null
Funciton: hypothetical protein
Locus tag: Spea_4141
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Spea_4140
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Spea_4139
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Spea_4138
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Spea_4137
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Spea_4136
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Spea_4135
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Spea_4142-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -123 4.2 ATAGTTGATCTAGTTCAAACTA Spea_4142
Shewanella piezotolerans WP3
Position: -148
Score: 4.03201
Sequence: TTATGAGATTTCAATTACCTTT
Position: -87
Score: 3.83642
Sequence: AAGTTAGCTGCAGATCACACTT
Locus tag: swp_5035
Name: null
Funciton: hypothetical protein swp_5035
Locus tag: swp_5034
Name: null
Funciton: hypothetical protein
Locus tag: swp_5033
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: swp_5032
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: swp_5031
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: swp_5030
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: swp_5029
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: swp_5028
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: swp_5027
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
swp_5035-swp_5034-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -148 4 TTATGAGATTTCAATTACCTTT swp_5035
-87 3.8 AAGTTAGCTGCAGATCACACTT
Shewanella putrefaciens CN-32
Position: -140
Score: 4.11224
Sequence: TTTGATGATCTACTTCAAACTT
Locus tag: Sputcn32_0342
Name: null
Funciton: hypothetical protein
Locus tag: Sputcn32_0341
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sputcn32_0340
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Sputcn32_0339
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sputcn32_0338
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sputcn32_0337
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sputcn32_0336
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sputcn32_0335
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Sputcn32_0342-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -140 4.1 TTTGATGATCTACTTCAAACTT Sputcn32_0342
Shewanella sediminis HAW-EB3
Position: -217
Score: 4.07283
Sequence: ATGCGTGATCTCTCTCATTTAA
Position: -123
Score: 3.86645
Sequence: ATTGATGATCCAGCTCAAGTTA
Locus tag: Ssed_4426
Name: null
Funciton: hypothetical protein
Locus tag: Ssed_4425
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Ssed_4424
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Ssed_4423
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Ssed_4422
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Ssed_4421
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Ssed_4420
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Ssed_4419
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Ssed_4426-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -217 4.1 ATGCGTGATCTCTCTCATTTAA Ssed_4426
-123 3.9 ATTGATGATCCAGCTCAAGTTA
Shewanella sp ANA-3
Position: -225
Score: 3.76818
Sequence: ATGCGTGATCCGTCGCAATTAT
Position: -131
Score: 3.94831
Sequence: TTTGATGATCCACCTCAAACAA
Locus tag: Shewana3_3911
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_3912
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shewana3_3913
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shewana3_3914
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shewana3_3915
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shewana3_3916
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shewana3_3917
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewana3_3918
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shewana3_3911-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -225 3.8 ATGCGTGATCCGTCGCAATTAT Shewana3_3911
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp MR-4
Position: -225
Score: 3.76818
Sequence: ATGCGTGATCCGTCGCAATTAT
Position: -131
Score: 3.94831
Sequence: TTTGATGATCCACCTCAAACAA
Locus tag: Shewmr4_3715
Name: null
Funciton: hypothetical protein
Locus tag: Shewmr4_3716
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shewmr4_3717
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shewmr4_3718
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shewmr4_3719
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shewmr4_3720
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shewmr4_3721
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr4_3722
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shewmr4_3715-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -225 3.8 ATGCGTGATCCGTCGCAATTAT Shewmr4_3715
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp MR-7
Position: -225
Score: 3.76818
Sequence: ATGCGTGATCCGTCGCAATTAT
Position: -131
Score: 3.94831
Sequence: TTTGATGATCCACCTCAAACAA
Locus tag: Shewmr7_3786
Name: null
Funciton: hypothetical protein
Locus tag: Shewmr7_3787
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shewmr7_3788
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shewmr7_3789
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shewmr7_3790
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shewmr7_3791
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3792
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3793
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shewmr7_3786-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -225 3.8 ATGCGTGATCCGTCGCAATTAT Shewmr7_3786
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp W3-18-1
Position: -140
Score: 4.11224
Sequence: TTTGATGATCTACTTCAAACTT
Locus tag: Sputw3181_3866
Name: null
Funciton: hypothetical protein
Locus tag: Sputw3181_3867
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sputw3181_3868
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Sputw3181_3869
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sputw3181_3870
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sputw3181_3871
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sputw3181_3872
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sputw3181_3873
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Sputw3181_3866-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -140 4.1 TTTGATGATCTACTTCAAACTT Sputw3181_3866
Shewanella woodyi ATCC 51908
Position: -148
Score: 4.23717
Sequence: TTTGATGATCTAGCTCAAAAAA
Locus tag: Swoo_4818
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_4817
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Swoo_4816
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Swoo_4815
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Swoo_4814
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Swoo_4813
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Swoo_4812
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Swoo_4811
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Swoo_4818-SO4505-SO4506-SO4507-SO4508-SO4509-fdhB-1-SO4511 -148 4.2 TTTGATGATCTAGCTCAAAAAA Swoo_4818
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