Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing SO1064 gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella denitrificans OS217
Position: -4
Score: 3.7888
Sequence: ATTCGTGAACTTGCGCAACATT
Locus tag: Sden_2910
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Sden_2911
Name: slyX
Funciton: protein SlyX
Locus tag: Sden_2912
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Sden_2913
Name: SO1061
Funciton: TPR domain protein
Locus tag: Sden_2914
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Sden_2915
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-SO1059 -4 3.8 ATTCGTGAACTTGCGCAACATT Sden_2910
Shewanella oneidensis MR-1
Position: -56
Score: 4.35872
Sequence: AACTGTGATTAATTTCACTCTA
Locus tag: SO1064
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: SO1063
Name: slyX
Funciton: protein SlyX
Locus tag: SO1062
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: SO1061
Name: SO1061
Funciton: TPR domain protein
Locus tag: SO1060
Name: spaP
Funciton: Putative lipoprotein
Locus tag: SO1059
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-SO1059 -56 4.4 AACTGTGATTAATTTCACTCTA SO1064
Shewanella putrefaciens CN-32
Position: -57
Score: 4.12052
Sequence: AATAGTGATTAATCTCACTTTC
Locus tag: Sputcn32_3011
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Sputcn32_3012
Name: slyX
Funciton: protein SlyX
Locus tag: Sputcn32_3013
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Sputcn32_3014
Name: SO1061
Funciton: TPR domain protein
Locus tag: Sputcn32_3015
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Sputcn32_3016
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-SO1059 -57 4.1 AATAGTGATTAATCTCACTTTC Sputcn32_3011
Shewanella sediminis HAW-EB3
Position: -148
Score: 3.78099
Sequence: ATACGTTATTCCAATTACATTG
Locus tag: Ssed_0917
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Ssed_0916
Name: slyX
Funciton: protein SlyX
Locus tag: Ssed_0915
Name: SO1061
Funciton: TPR domain protein
Locus tag: Ssed_0914
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Ssed_0913
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-SO1061-spaP-SO1059 -148 3.8 ATACGTTATTCCAATTACATTG Ssed_0917
Shewanella sp ANA-3
Position: -56
Score: 4.31241
Sequence: AACTGTGATTAATCTCACTCTA
Locus tag: Shewana3_0902
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Shewana3_0901
Name: slyX
Funciton: protein SlyX
Locus tag: Shewana3_0900
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Shewana3_0899
Name: SO1061
Funciton: TPR domain protein
Locus tag: Shewana3_0898
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Shewana3_0897
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-SO1059 -56 4.3 AACTGTGATTAATCTCACTCTA Shewana3_0902
Shewanella sp MR-4
Position: -56
Score: 4.31241
Sequence: AACTGTGATTAATCTCACTCTA
Locus tag: Shewmr4_3035
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Shewmr4_3036
Name: slyX
Funciton: protein SlyX
Locus tag: Shewmr4_3037
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Shewmr4_3038
Name: SO1061
Funciton: TPR domain protein
Locus tag: Shewmr4_3039
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Shewmr4_3040
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-SO1059 -56 4.3 AACTGTGATTAATCTCACTCTA Shewmr4_3035
Shewanella sp MR-7
Position: -56
Score: 4.31241
Sequence: AACTGTGATTAATCTCACTCTA
Locus tag: Shewmr7_0939
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Shewmr7_0938
Name: slyX
Funciton: protein SlyX
Locus tag: Shewmr7_0937
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Shewmr7_0936
Name: SO1061
Funciton: TPR domain protein
Locus tag: Shewmr7_0935
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Shewmr7_0934
Name: null
Funciton: hypothetical protein
Locus tag: Shewmr7_0933
Name: Shewmr4_2117
Funciton: transposase
Locus tag: Shewmr7_0932
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-Shewmr7_0934-Shewmr4_2117-SO1059 -56 4.3 AACTGTGATTAATCTCACTCTA Shewmr7_0939
Shewanella sp W3-18-1
Position: -57
Score: 4.12052
Sequence: AATAGTGATTAATCTCACTTTC
Locus tag: Sputw3181_0938
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Sputw3181_0937
Name: slyX
Funciton: protein SlyX
Locus tag: Sputw3181_0936
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Sputw3181_0935
Name: SO1061
Funciton: TPR domain protein
Locus tag: Sputw3181_0934
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Sputw3181_0933
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064-slyX-def-2-SO1061-spaP-SO1059 -57 4.1 AATAGTGATTAATCTCACTTTC Sputw3181_0938
Shewanella woodyi ATCC 51908
Position: -92
Score: 3.75132
Sequence: ATATGATATTCCAATTACATTA
Locus tag: Swoo_0967
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Swoo_0966
Name: slyX
Funciton: protein SlyX
Locus tag: Swoo_0965
Name: SO1061
Funciton: TPR domain protein
Locus tag: Swoo_0964
Name: spaP
Funciton: Putative lipoprotein
SO1064-slyX-SO1061-spaP -92 3.8 ATATGATATTCCAATTACATTA Swoo_0967
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