Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing SO1278 gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella oneidensis MR-1
Position: -297
Score: 4.36307
Sequence: CATTGTGAGTTGAGTCATATTT
Position: -189
Score: 3.97126
Sequence: TAATGGGAGCGTCATCACACTC
Position: -57
Score: 4.13666
Sequence: TAAAATGAACTAGATCAAAATA
Locus tag: SO1278
Name: SO1278
Funciton: methyl-accepting chemotaxis protein
SO1278 -297 4.4 CATTGTGAGTTGAGTCATATTT SO1278
-189 4 TAATGGGAGCGTCATCACACTC
-57 4.1 TAAAATGAACTAGATCAAAATA
Shewanella sp ANA-3
Position: -217
Score: 4.11314
Sequence: TTTCGCGATAAATATCAAACTT
Position: -60
Score: 4.13008
Sequence: AAAAATGAACTAGATCAAAATA
Locus tag: Shewana3_3088
Name: SO1278
Funciton: methyl-accepting chemotaxis protein
SO1278 -217 4.1 TTTCGCGATAAATATCAAACTT Shewana3_3088
-60 4.1 AAAAATGAACTAGATCAAAATA
Shewanella sp MR-4
Position: -249
Score: 3.7259
Sequence: TATTGTGAGTTAGGTCATGTCG
Position: -60
Score: 4.13008
Sequence: AAAAATGAACTAGATCAAAATA
Locus tag: Shewmr4_2909
Name: SO1278
Funciton: methyl-accepting chemotaxis protein
SO1278 -249 3.7 TATTGTGAGTTAGGTCATGTCG Shewmr4_2909
-60 4.1 AAAAATGAACTAGATCAAAATA
Shewanella sp MR-7
Position: -249
Score: 3.7259
Sequence: TATTGTGAGTTAGGTCATGTCG
Position: -60
Score: 4.13008
Sequence: AAAAATGAACTAGATCAAAATA
Locus tag: Shewmr7_2991
Name: SO1278
Funciton: methyl-accepting chemotaxis protein
SO1278 -249 3.7 TATTGTGAGTTAGGTCATGTCG Shewmr7_2991
-60 4.1 AAAAATGAACTAGATCAAAATA
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