Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing yfiA-1 gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella baltica OS155
Position: -222
Score: 4.24049
Sequence: TTTTGTGATTGATTTATTATTA
Position: -144
Score: 4.29023
Sequence: CTTCTTGATGGCGGTCACATTT
Locus tag: Sbal_1239
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -222 4.2 TTTTGTGATTGATTTATTATTA Sbal_1239
-144 4.3 CTTCTTGATGGCGGTCACATTT
Shewanella halifaxensis HAW-EB4
Position: -319
Score: 3.94617
Sequence: AAGAGTGATAAAAATCAAGCTA
Position: -230
Score: 3.78315
Sequence: TATCCTGATGAATGCCACAATT
Locus tag: Shal_1258
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -319 3.9 AAGAGTGATAAAAATCAAGCTA Shal_1258
-230 3.8 TATCCTGATGAATGCCACAATT
Shewanella oneidensis MR-1
Position: -142
Score: 4.65684
Sequence: TTCTTTGATAGGTCTCACATTT
Locus tag: SO3403
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -142 4.7 TTCTTTGATAGGTCTCACATTT SO3403
Shewanella piezotolerans WP3
Position: -177
Score: 4.05538
Sequence: TGATGTGATAAAAAGCACTCAT
Locus tag: swp_3409
Name: null
Funciton: hypothetical protein swp_3409
Locus tag: swp_3408
Name: yfiA-1
Funciton: ribosomal subunit interface protein
swp_3409-yfiA-1 -177 4.1 TGATGTGATAAAAAGCACTCAT swp_3409
Shewanella putrefaciens CN-32
Position: -145
Score: 4.88106
Sequence: TTCTTTGATGTAACTCACATTT
Locus tag: Sputcn32_2725
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -145 4.9 TTCTTTGATGTAACTCACATTT Sputcn32_2725
Shewanella sp ANA-3
Position: -142
Score: 4.56864
Sequence: TTCTTTGATAAGTCTCACATTT
Locus tag: Shewana3_1151
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -142 4.6 TTCTTTGATAAGTCTCACATTT Shewana3_1151
Shewanella sp MR-4
Position: -142
Score: 4.60695
Sequence: TTCTTTGATAAATCTCACATTT
Locus tag: Shewmr4_1150
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -142 4.6 TTCTTTGATAAATCTCACATTT Shewmr4_1150
Shewanella sp MR-7
Position: -142
Score: 5.00289
Sequence: TTTTTTGATAAATCTCACATTT
Locus tag: Shewmr7_1221
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -142 5 TTTTTTGATAAATCTCACATTT Shewmr7_1221
Shewanella sp W3-18-1
Position: -145
Score: 4.88106
Sequence: TTCTTTGATGTAACTCACATTT
Locus tag: Sputw3181_1287
Name: yfiA-1
Funciton: ribosomal subunit interface protein
yfiA-1 -145 4.9 TTCTTTGATGTAACTCACATTT Sputw3181_1287
© 2009-2020 RegPrecise