Orthologous regulated operons containing ccmA gene
| Regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -207
Score: 3.79572 Sequence: TTTTGTGAGTTCCCTCCCAGCT
Locus tag: Sama_0245
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sama_0244
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sama_0243
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sama_0242
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sama_0241
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -207 | 3.8 | TTTTGTGAGTTCCCTCCCAGCT | Sama_0245 |
| Shewanella baltica OS155 | ||||
|
Position: -212
Score: 4.44046 Sequence: TTTTGTGATTAGAATCTCAACA
Locus tag: Sbal_0228
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sbal_0227
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sbal_0226
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sbal_0225
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sbal_0224
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -212 | 4.4 | TTTTGTGATTAGAATCTCAACA | Sbal_0228 |
| Shewanella denitrificans OS217 | ||||
|
Position: -186
Score: 3.9967 Sequence: TTTTGTGATAAGCCTCCCAGCT
Locus tag: Sden_3569
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sden_3570
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sden_3571
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sden_3572
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sden_3573
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -186 | 4 | TTTTGTGATAAGCCTCCCAGCT | Sden_3569 |
| Shewanella frigidimarina NCIMB 400 | ||||
|
Position: -213
Score: 4.15994 Sequence: TTTTGTGATAACAATCTCAGCT
Locus tag: Sfri_0179
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sfri_0178
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sfri_0177
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sfri_0176
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sfri_0175
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -213 | 4.2 | TTTTGTGATAACAATCTCAGCT | Sfri_0179 |
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -212
Score: 3.937 Sequence: TTTTGTGACATAAACCGTACTA
Position: -112
Score: 3.75256 Sequence: ATATTCGAACTACATCAAATTG
Locus tag: Shal_4104
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shal_4105
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shal_4106
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shal_4107
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shal_4108
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -212 | 3.9 | TTTTGTGACATAAACCGTACTA | Shal_4104 |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella loihica PV-4 | ||||
|
Position: -223
Score: 4.83884 Sequence: TTTTGTGATTAATATCAGAATT
Locus tag: Shew_0190
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shew_0189
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shew_0188
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shew_0187
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shew_0186
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -223 | 4.8 | TTTTGTGATTAATATCAGAATT | Shew_0190 |
| Shewanella oneidensis MR-1 | ||||
|
Position: -222
Score: 4.2202 Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: SO0263
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: SO0262
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: SO0261
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: SO0260
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: SO0259
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA | SO0263 |
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -212
Score: 4.13455 Sequence: TTTTGTGATATTAATCTCGCCA
Position: -112
Score: 3.75256 Sequence: ATATTCGAACTACATCAAATTG
Locus tag: Spea_0215
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Spea_0214
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Spea_0213
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Spea_0212
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Spea_0211
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -212 | 4.1 | TTTTGTGATATTAATCTCGCCA | Spea_0215 |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella piezotolerans WP3 | ||||
|
Position: -212
Score: 5.00451 Sequence: ATTTGTGATTTAAATCGCGTTA
Position: -112
Score: 3.75256 Sequence: ATATTCGAACTACATCAAATTG
Locus tag: swp_2043
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: swp_2042
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: swp_2041
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: swp_2040
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: swp_2039
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -212 | 5 | ATTTGTGATTTAAATCGCGTTA | swp_2043 |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella putrefaciens CN-32 | ||||
|
Position: -213
Score: 3.91053 Sequence: TTTTGTGATTAGAATCTCAGCG
Locus tag: Sputcn32_3727
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sputcn32_3728
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sputcn32_3729
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sputcn32_3730
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sputcn32_3731
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG | Sputcn32_3727 |
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -223
Score: 4.49775 Sequence: TTTTGTGATTTCAATCAAAGCT
Locus tag: Ssed_4287
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Ssed_4288
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Ssed_4289
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Ssed_4290
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Ssed_4291
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -223 | 4.5 | TTTTGTGATTTCAATCAAAGCT | Ssed_4287 |
| Shewanella sp ANA-3 | ||||
|
Position: -222
Score: 4.2202 Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: Shewana3_0231
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shewana3_0230
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shewana3_0229
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shewana3_0228
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shewana3_0227
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA | Shewana3_0231 |
| Shewanella sp MR-4 | ||||
|
Position: -222
Score: 4.2202 Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: Shewmr4_0231
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shewmr4_0230
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shewmr4_0229
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shewmr4_0228
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shewmr4_0227
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA | Shewmr4_0231 |
| Shewanella sp MR-7 | ||||
|
Position: -222
Score: 3.91053 Sequence: TTTTGTGATTAGAATCTCAGCG
Locus tag: Shewmr7_0226
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shewmr7_0225
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shewmr7_0224
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shewmr7_0223
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shewmr7_0222
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -222 | 3.9 | TTTTGTGATTAGAATCTCAGCG | Shewmr7_0226 |
| Shewanella sp W3-18-1 | ||||
|
Position: -213
Score: 3.91053 Sequence: TTTTGTGATTAGAATCTCAGCG
Locus tag: Sputw3181_0188
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sputw3181_0187
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sputw3181_0186
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sputw3181_0185
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sputw3181_0184
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG | Sputw3181_0188 |
| Shewanella woodyi ATCC 51908 | ||||
|
Position: -224
Score: 4.15542 Sequence: TTTTATGACTTTAATCAAAGTA
Locus tag: Swoo_4659
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Swoo_4660
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Swoo_4661
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Swoo_4662
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Swoo_4663
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
||||
| ccmA-ccmB-ccmC-ccmD-ccmE | -224 | 4.2 | TTTTATGACTTTAATCAAAGTA | Swoo_4659 |