Regulog MSMEG_3606 - Mycobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:
Biological process:	D-threitol utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Mycobacteriaceae
By TF family - DeoR
By pathway - D-threitol utilization

Statistics of regulated genes
Genome	Genes	Operons
Mycobacterium abscessus ATCC 19977
Mycobacterium avium 104
Mycobacterium flavescens PYR-GCK
Mycobacterium leprae TN
Mycobacterium marinum M
Mycobacterium smegmatis str. MC2 155	9	2
Mycobacterium sp. JLS	12	2
Mycobacterium tuberculosis H37Rv
Mycobacterium vanbaalenii PYR-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
MSMEG_3606	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	* Mycobacterium smegmatis str. MC2 155 Site: position = -57 score = 6.18236 sequence = TCTGCACATATGTGCAGA Site: position = -77 score = 4.20411 sequence = TATGCTCATGTGTCAACG Gene: MSMEG_3606: Transcriptional regulator for D-threitol utilization, DeoR family	* Mycobacterium sp. JLS Site: position = -68 score = 4.65065 sequence = TATGCTCATATGTCAACG Site: position = -48 score = 6.05797 sequence = GGTGCACATATGTGCACG Gene: Mjls_2817: Transcriptional regulator for D-threitol utilization, DeoR family	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	Transcriptional regulator for D-threitol utilization, DeoR family
MSMEG_3912	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3607: D-threitol dehydrogenase	Mycobacterium sp. JLS Gene: Mjls_2818: D-threitol dehydrogenase	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	D-threitol dehydrogenase

CRON 2.
Mjls_2816	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155	* Mycobacterium sp. JLS Site: position = -127 score = 6.05797 sequence = CGTGCACATATGTGCACC Site: position = -107 score = 4.65065 sequence = CGTTGACATATGAGCATA Gene: Mjls_2816: sugar isomerase (SIS)	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	sugar isomerase (SIS)
Mjls_2815	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155	Mycobacterium sp. JLS Gene: Mjls_2815: Carbohydrate kinase, FGGY family cluster with sorbitoldehydrogenase	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	Carbohydrate kinase, FGGY family cluster with sorbitoldehydrogenase
Mjls_2814	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155	Mycobacterium sp. JLS Gene: Mjls_2814: ribulose-phosphate 3-epimerase	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	ribulose-phosphate 3-epimerase
MSMEG_3605	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	* Mycobacterium smegmatis str. MC2 155 Site: position = -159 score = 6.18236 sequence = TCTGCACATATGTGCAGA Site: position = -139 score = 4.20411 sequence = CGTTGACACATGAGCATA Gene: MSMEG_3605: weak D-sorbitol / D-xylitol dehydrogenase	Mycobacterium sp. JLS Gene: Mjls_2813: weak D-sorbitol / D-xylitol dehydrogenase	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	weak D-sorbitol / D-xylitol dehydrogenase
MSMEG_3604	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3604: weak D-sorbitol dehydrogenase	Mycobacterium sp. JLS Gene: Mjls_2812: weak D-sorbitol dehydrogenase	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	weak D-sorbitol dehydrogenase
MSMEG_3603	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3603: oxidoreductase, zinc-binding dehydrogenase family protein	Mycobacterium sp. JLS Gene: Mjls_2811: oxidoreductase, zinc-binding dehydrogenase family protein	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	oxidoreductase, zinc-binding dehydrogenase family protein
MSMEG_3602	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3602: D-threitol ABC transporter, ATP-binding protein	Mycobacterium sp. JLS Gene: Mjls_2810: D-threitol ABC transporter, ATP-binding protein	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	D-threitol ABC transporter, ATP-binding protein
MSMEG_3601	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3601: D-threitol ABC transporter, permease protein	Mycobacterium sp. JLS Gene: Mjls_2809: D-threitol ABC transporter, permease protein	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	D-threitol ABC transporter, permease protein
MSMEG_3599	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3599: D-threitol ABC transporter, substrate-binding component (D-threitol, xylitol)	Mycobacterium sp. JLS Gene: Mjls_2808: D-threitol ABC transporter, substrate-binding component (D-threitol, xylitol)	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	D-threitol ABC transporter, substrate-binding component (D-threitol, xylitol)
MSMEG_3598	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_3598: Sugar polyol ABC transporter, substrate-binding component (Xylitol, sorbitol)	Mycobacterium sp. JLS Gene: Mjls_2807: Sugar polyol ABC transporter, substrate-binding component (Xylitol, sorbitol)	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	Sugar polyol ABC transporter, substrate-binding component (Xylitol, sorbitol)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MSMEG_3606 - Mycobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --