Regulog LacR - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	Lactose utilization
Effector:	Galactose-6-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By TF family - DeoR
By effector - Galactose-6-phosphate
By pathway - Lactose utilization

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	7	1
Staphylococcus capitis SK14	7	1
Staphylococcus epidermidis ATCC 12228	7	1
Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus haemolyticus JCSC1435	7	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Macrococcus caseolyticus JCSC5402

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
lacA	* Staphylococcus aureus subsp. aureus N315 Site: position = -130 score = 3.69 sequence = TGTTTGTTTATGTTT Gene: SA1997: galactose-6-phosphate isomerase LacA subunit	* Staphylococcus capitis SK14 Site: position = -98 score = 3.41931 sequence = TGTTGTATAGTGTTT Gene: STACA0001_1281: galactose-6-phosphate isomerase LacA subunit	* Staphylococcus epidermidis ATCC 12228 Site: position = -97 score = 3.69 sequence = TGTTTAAATATGTTT Gene: SE1787: galactose-6-phosphate isomerase LacA subunit	Staphylococcus carnosus subsp. carnosus TM300	* Staphylococcus haemolyticus JCSC1435 Site: position = -93 score = 3.69 sequence = TGTTTGTTTATGTTT Gene: SH0842: galactose-6-phosphate isomerase LacA subunit	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	galactose-6-phosphate isomerase LacA subunit
lacB	Staphylococcus aureus subsp. aureus N315 Gene: SA1996: galactose-6-phosphate isomerase LacB subunit	Staphylococcus capitis SK14 Gene: STACA0001_1282: galactose-6-phosphate isomerase LacB subunit	Staphylococcus epidermidis ATCC 12228 Gene: SE1786: galactose-6-phosphate isomerase LacB subunit	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0843: galactose-6-phosphate isomerase LacB subunit	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	galactose-6-phosphate isomerase LacB subunit
lacC	Staphylococcus aureus subsp. aureus N315 Gene: SA1995: tagatose-6-phosphate kinase	Staphylococcus capitis SK14 Gene: STACA0001_1283: tagatose-6-phosphate kinase	Staphylococcus epidermidis ATCC 12228 Gene: SE1785: tagatose-6-phosphate kinase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0844: tagatose-6-phosphate kinase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	tagatose-6-phosphate kinase
lacD	Staphylococcus aureus subsp. aureus N315 Gene: SA1994: tagatose 1,6-diphosphate aldolase	Staphylococcus capitis SK14 Gene: STACA0001_1284: tagatose 1,6-diphosphate aldolase	Staphylococcus epidermidis ATCC 12228 Gene: SE1784: tagatose 1,6-diphosphate aldolase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0845: tagatose 1,6-diphosphate aldolase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	tagatose 1,6-diphosphate aldolase
lacF	Staphylococcus aureus subsp. aureus N315 Gene: SA1993: PTS system, lactose-specific IIA component	Staphylococcus capitis SK14 Gene: STACA0001_1285: PTS system, lactose-specific IIA component	Staphylococcus epidermidis ATCC 12228 Gene: SE1783: PTS system, lactose-specific IIA component	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0846: PTS system, lactose-specific IIA component	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	PTS system, lactose-specific IIA component
lacE	Staphylococcus aureus subsp. aureus N315 Gene: SA1992: PTS system, lactose-specific IIBC component	Staphylococcus capitis SK14 Gene: STACA0001_1286: PTS system, lactose-specific IIBC component	Staphylococcus epidermidis ATCC 12228 Gene: SE1782: PTS system, lactose-specific IIBC component	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0847: PTS system, lactose-specific IIBC component	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	PTS system, lactose-specific IIBC component
lacG	Staphylococcus aureus subsp. aureus N315 Gene: SA1991: 6-phospho-beta-galactosidase	Staphylococcus capitis SK14 Gene: STACA0001_1287: 6-phospho-beta-galactosidase	Staphylococcus epidermidis ATCC 12228 Gene: SE1781: 6-phospho-beta-galactosidase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0848: 6-phospho-beta-galactosidase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	6-phospho-beta-galactosidase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LacR - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --