Regulog GalR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | |
| Biological process: | Galactose utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - DeoR
- By pathway - Galactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | 4 | 2 |
| Bifidobacterium adolescentis ATCC 15703 | 4 | 2 |
| Bifidobacterium angulatum DSM 20098 | 1 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | 4 | 2 |
| Bifidobacterium bifidum NCIMB 41171 | 4 | 2 |
| Bifidobacterium breve DSM 20213 | 3 | 1 |
| Bifidobacterium dentium Bd1 | 4 | 2 |
| Bifidobacterium gallicum DSM 20093 | 3 | 1 |
| Bifidobacterium longum NCC2705 | 4 | 2 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| galE1 |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -124 score = 7.68911 sequence = TTGTGCG-(3)-ATGTTCG Gene: Blon_0538: UDP-glucose 4-epimerase (EC 5.1.3.2) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -69 score = 7.12019 sequence = GTGTGCG-(3)-GTGTTCA Gene: BAD_0391: UDP-glucose 4-epimerase (EC 5.1.3.2) |
|
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -106 score = 6.8822 sequence = GTGTTCG-(3)-GTGTTCG Gene: BLA_0437: UDP-glucose 4-epimerase (EC 5.1.3.2) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -149 score = 6.45893 sequence = TTGTTCT-(3)-ATGTTCA Gene: BbifN4_010100008300: UDP-glucose 4-epimerase (EC 5.1.3.2) |
|
*
Bifidobacterium dentium Bd1 Site: position = -144 score = 7.57888 sequence = ATGTGCG-(3)-ATGTTCA Gene: BDP_0531: UDP-glucose 4-epimerase (EC 5.1.3.2) |
Gene: BIFGAL_00919: UDP-glucose 4-epimerase (EC 5.1.3.2) |
*
Bifidobacterium longum NCC2705 Site: position = -124 score = 7.68911 sequence = TTGTGCG-(3)-ATGTTCG Gene: BL1671: UDP-glucose 4-epimerase (EC 5.1.3.2) |
Gene: HMPREF0424_1119: UDP-glucose 4-epimerase (EC 5.1.3.2) |
UDP-glucose 4-epimerase (EC 5.1.3.2) |
| CRON 2. | |||||||||||
| galR |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -122 score = 6.45697 sequence = ATGTGCG-(3)-TTGCGTG Site: position = -18 score = 7.54511 sequence = GTGTGCG-(3)-ATGTTCA Gene: Blon_2064: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -103 score = 6.77451 sequence = ACGTTCG-(3)-TTGTTCG Site: position = 0 score = 7.57888 sequence = ATGTGCG-(3)-ATGTTCA Gene: BAD_1333: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium angulatum DSM 20098 Site: position = -18 score = 6.93857 sequence = GCGTGCG-(3)-ATGTGCA Gene: BIFANG_00824: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = 0 score = 7.72288 sequence = ATGTGCG-(3)-ATGTTCG Site: position = -72 score = 6.67013 sequence = ATATGCG-(3)-TTGTTCG Gene: BLA_0557: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -117 score = 7.57888 sequence = ATGTGCG-(3)-ATGTTCA Gene: BbifN4_010100001540: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium breve DSM 20213 Site: position = -18 score = 7.68911 sequence = GTGTGCG-(3)-ATGTTCG Site: position = -122 score = 6.91599 sequence = ATGTGCG-(3)-TTGCGCG Gene: BIFBRE_00714: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium dentium Bd1 Site: position = -18 score = 7.68911 sequence = GTGTGCG-(3)-ATGTTCG Site: position = -111 score = 6.97872 sequence = GCGTGCG-(3)-TTGTGCG Gene: BDP_1796: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium gallicum DSM 20093 Site: position = -75 score = 7.57888 sequence = ATGTGCG-(3)-ATGTTCA Gene: BIFGAL_00449: Transcriptional regulator of galactose metabolism, DeoR family |
*
Bifidobacterium longum NCC2705 Site: position = 63 score = 7.68911 sequence = GTGTGCG-(3)-ATGTTCG Site: position = -40 score = 6.91599 sequence = ATGTGCG-(3)-TTGCGCG Gene: BL1212: Transcriptional regulator of galactose metabolism, DeoR family |
|
Transcriptional regulator of galactose metabolism, DeoR family |
| galT1 |
Gene: Blon_2063: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: BAD_1332: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
|
Gene: BLA_0556: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: BbifN4_010100001545: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: BIFBRE_00715: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: BDP_1795: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: BIFGAL_00450: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: BL1211: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
|
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
| galK |
Gene: Blon_2062: Galactokinase (EC 2.7.1.6) |
Gene: BAD_1331: Galactokinase (EC 2.7.1.6) |
|
Gene: BLA_0555: Galactokinase (EC 2.7.1.6) |
Gene: BbifN4_010100001550: Galactokinase (EC 2.7.1.6) |
Gene: BIFBRE_00716: Galactokinase (EC 2.7.1.6) |
Gene: BDP_1794: Galactokinase (EC 2.7.1.6) |
Gene: BIFGAL_00451: Galactokinase (EC 2.7.1.6) |
Gene: BL1210: Galactokinase (EC 2.7.1.6) |
|
Galactokinase (EC 2.7.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |