Regulog FapR - Staphylococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | FapR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Malonyl-CoA; Malonyl-ACP |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - FapR
- By effector - Malonyl-CoA
- By effector - Malonyl-ACP
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 8 | 4 |
| Staphylococcus capitis SK14 | 10 | 5 |
| Staphylococcus epidermidis ATCC 12228 | 8 | 4 |
| Staphylococcus carnosus subsp. carnosus TM300 | 7 | 3 |
| Staphylococcus haemolyticus JCSC1435 | 10 | 5 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 9 | 4 |
| Macrococcus caseolyticus JCSC5402 | 10 | 5 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| scoA |
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Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -46 score = 6.06791 sequence = ATTAGTACTAGGTATTAAA Gene: SSP2200: succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A |
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succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A |
| scoB |
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Gene: SSP2199: succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B |
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succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B |
| CRON 2. | ||||||||
| perR |
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Staphylococcus aureus subsp. aureus N315 Site: position = -49 score = 4.75387 sequence = ATTTATAGTAAGTAATAAT Gene: SA1678: peroxide-responsive repressor PerR |
*
Staphylococcus capitis SK14 Site: position = -48 score = 5.35521 sequence = ATTAATATTAAGTAATAAT Gene: STACA0001_1914: peroxide-responsive repressor PerR |
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Staphylococcus epidermidis ATCC 12228 Site: position = -48 score = 5.35521 sequence = ATTAATATTAAGTAATAAT Gene: SE1545: peroxide-responsive repressor PerR |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -48 score = 4.75387 sequence = ATTTATAGTAAGTAATAAT Gene: Sca_1434: peroxide-responsive repressor PerR |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -47 score = 5.51485 sequence = ATTAATATCAAGTAATAAT Gene: SH1102: peroxide-responsive repressor PerR |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -48 score = 5.35521 sequence = ATTAATATTAAGTAATAAT Gene: SSP0932: peroxide-responsive repressor PerR |
Gene: MCCL_1591: peroxide-responsive repressor PerR |
peroxide-responsive repressor PerR |
| CRON 3. | ||||||||
| fapR |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -36 score = 5.96857 sequence = TTTAAGACTAGGTACTAAA Gene: SA1071: transcriptional regulator of fatty acid biosynthesis |
*
Staphylococcus capitis SK14 Site: position = -34 score = 5.96857 sequence = TTTAAGACTTGGTACTAAA Gene: STACA0001_2225: transcriptional regulator of fatty acid biosynthesis |
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Staphylococcus epidermidis ATCC 12228 Site: position = 17 score = 5.96857 sequence = TTTAAGACTTGGTACTAAA Gene: SE0903: transcriptional regulator of fatty acid biosynthesis |
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*
Staphylococcus haemolyticus JCSC1435 Site: position = -42 score = 5.88983 sequence = TTTAAGACTTGGTACTAAT Gene: SH1686: transcriptional regulator of fatty acid biosynthesis |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -39 score = 5.96857 sequence = TTTAAGACTTGGTACTAAA Gene: SSP1541: transcriptional regulator of fatty acid biosynthesis |
*
Macrococcus caseolyticus JCSC5402 Site: position = -34 score = 5.45574 sequence = ATTAAGACCAACTACTAAT Gene: MCCL_0813: transcriptional regulator of fatty acid biosynthesis |
transcriptional regulator of fatty acid biosynthesis |
| plsX |
Gene: SA1072: fatty acid/phospholipid synthesis protein PlsX |
Gene: STACA0001_2226: fatty acid/phospholipid synthesis protein PlsX |
Gene: SE0904: fatty acid/phospholipid synthesis protein PlsX |
Gene: Sca_0852: fatty acid/phospholipid synthesis protein PlsX |
Gene: SH1685: fatty acid/phospholipid synthesis protein PlsX |
Gene: SSP1540: fatty acid phospholipid synthesis protein PlsX |
Gene: MCCL_0814: fatty acid/phospholipid synthesis protein PlsX |
fatty acid/phospholipid synthesis protein PlsX |
| fabD |
Gene: SA1073: malonyl CoA-acyl carrier protein transacylase |
Gene: STACA0001_2227: malonyl CoA-acyl carrier protein transacylase |
Gene: SE0905: malonyl CoA-acyl carrier protein transacylase |
Gene: Sca_0853: malonyl CoA-acyl carrier protein transacylase |
Gene: SH1684: malonyl CoA-acyl carrier protein transacylase |
Gene: SSP1539: malonyl CoA-acyl carrier protein transacylase |
Gene: MCCL_0815: malonyl CoA-acyl carrier protein transacylase |
malonyl CoA-acyl carrier protein transacylase |
| fabG |
Gene: SA1074: 3-oxoacyl-(acyl-carrier protein) reductase |
Gene: STACA0001_2228: 3-oxoacyl-(acyl-carrier protein) reductase |
Gene: SE0906: 3-oxoacyl-(acyl-carrier protein) reductase |
Gene: Sca_0854: 3-oxoacyl-(acyl-carrier protein) reductase |
Gene: SH1683: 3-oxoacyl-(acyl-carrier protein) reductase |
Gene: SSP1538: 3-oxoacyl-(acyl-carrier protein) reductase |
Gene: MCCL_0816: 3-oxoacyl-(acyl-carrier protein) reductase |
3-oxoacyl-(acyl-carrier protein) reductase |
| fapR |
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*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -36 score = 5.55185 sequence = CTTAAGACTTGGTACTAAA Gene: Sca_0851: transcriptional regulator of fatty acid biosynthesis |
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transcriptional regulator of fatty acid biosynthesis |
| CRON 4. | ||||||||
| fabI |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -111 score = 4.70365 sequence = TTTATTAAAAAGTCATAAT Gene: SA0869: enoyl-(acyl carrier protein) reductase |
*
Staphylococcus capitis SK14 Site: position = -112 score = 5.79128 sequence = TTTATTATCAGGTACTAAA Gene: STACA0001_0124: enoyl-(acyl carrier protein) reductase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -109 score = 5.79128 sequence = TTTATTATCAGGTACTAAA Gene: SE0712: enoyl-(acyl carrier protein) reductase |
Gene: Sca_0612: enoyl-(acyl carrier protein) reductase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -131 score = 5.28643 sequence = TATATGACCAGGTAATAAT Gene: SH1947: enoyl-(acyl carrier protein) reductase |
Gene: SSP1774: enoyl-(acyl carrier protein) reductase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -45 score = 5.26621 sequence = TTTAGTAGTAGGTACTAGA Gene: MCCL_0625: enoyl-[acyl-carrier-protein] reductase |
enoyl-(acyl carrier protein) reductase |
| CRON 5. | ||||||||
| fabH |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -44 score = 6.26824 sequence = ATTAATACCTGGTATTAAA Gene: SA0842: 3-oxoacyl-[acyl-carrier-protein] synthase III |
*
Staphylococcus capitis SK14 Site: position = -44 score = 6.26824 sequence = ATTAATACCTGGTATTAAA Gene: STACA0001_0149: 3-oxoacyl-[acyl-carrier-protein] synthase III |
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Staphylococcus epidermidis ATCC 12228 Site: position = -43 score = 6.26824 sequence = ATTAATACCTGGTATTAAA Gene: SE0677: 3-oxoacyl-[acyl-carrier-protein] synthase III |
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Staphylococcus carnosus subsp. carnosus TM300 Site: position = -44 score = 6.26824 sequence = ATTAATACCTGGTATTAAA Gene: Sca_0584: putative 3-oxoacyl-[acyl-carrier-protein] synthase III |
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Staphylococcus haemolyticus JCSC1435 Site: position = -44 score = 6.26824 sequence = ATTAATACCTGGTATTAAA Gene: SH1973: 3-oxoacyl-[acyl-carrier-protein] synthase III |
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Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -44 score = 6.26824 sequence = ATTAATACCTGGTATTAAA Gene: SSP1798: 3-oxoacyl-[acyl-carrier-protein] synthase III |
*
Macrococcus caseolyticus JCSC5402 Site: position = -42 score = 5.83151 sequence = ATTAGTACCAGATACTAAA Gene: MCCL_0603: 3-oxoacyl-[acyl-carrier-protein] synthase III |
3-oxoacyl-[acyl-carrier-protein] synthase III |
| fabF |
Gene: SA0843: 3-oxoacyl-[acyl-carrier-protein] synthase II |
Gene: STACA0001_0148: 3-oxoacyl-[acyl-carrier-protein] synthase II |
Gene: SE0678: 3-oxoacyl-[acyl-carrier-protein] synthase II |
Gene: Sca_0585: 3-oxoacyl-[acyl-carrier-protein] synthase II |
Gene: SH1972: 3-oxoacyl-[acyl-carrier-protein] synthase |
Gene: SSP1797: 3-oxoacyl-[acyl-carrier-protein] synthase II |
Gene: MCCL_0604: 3-oxoacyl-[acyl-carrier-protein] synthase II |
3-oxoacyl-[acyl-carrier-protein] synthase II |
| CRON 6. | ||||||||
| desA |
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Macrococcus caseolyticus JCSC5402 Site: position = -100 score = 5.82951 sequence = ATTAGTACTAGGTAATAAT Gene: MCCL_0154: Omega-6 fatty acid desaturase |
Omega-6 fatty acid desaturase |
| CRON 7. | ||||||||
| accB |
Gene: SA1358: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
*
Staphylococcus capitis SK14 Site: position = -164 score = 4.48303 sequence = ATTAATAATCATTACTAAA Gene: STACA0001_1765: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
Gene: SE1208: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
Gene: Sca_1151: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -121 score = 4.39831 sequence = AATAATAATAAGCATTAAA Gene: SH1388: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
Gene: SSP1227: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
*
Macrococcus caseolyticus JCSC5402 Site: position = -41 score = 5.53448 sequence = ATTAGTAGCTAGTCTTAAA Gene: MCCL_1173: acetyl-CoA carboxylase biotin carboxyl carrier subunit |
acetyl-CoA carboxylase biotin carboxyl carrier subunit |
| accC |
Gene: SA1357: biotin carboxylase subunit of acetyl-CoA carboxylase |
Gene: STACA0001_1764: biotin carboxylase subunit of acetyl-CoA carboxylase |
Gene: SE1207: biotin carboxylase subunit of acetyl-CoA carboxylase |
Gene: Sca_1150: biotin carboxylase subunit of acetyl-CoA carboxylase |
Gene: SH1389: biotin carboxylase subunit of acetyl-CoA carboxylase |
Gene: SSP1228: biotin carboxylase subunit of acetyl-CoA carboxylase |
Gene: MCCL_1172: biotin carboxylase subunit of acetyl-CoA carboxylase |
biotin carboxylase subunit of acetyl-CoA carboxylase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |