Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SO0734 - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: PadR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 1
Shewanella putrefaciens CN-32 2 1
Shewanella sp W3-18-1 2 1
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155 2 1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SO0734
*
Shewanella oneidensis MR-1

Site:
position = -74
score = 10.4253
sequence = TTACTGTGTG-(11)-TTGCTGTGTG

Gene: SO_0734: Transcriptional regulator, PadR family
*
Shewanella putrefaciens CN-32

Site:
position = -61
score = 10.4253
sequence = TTACTGTGTG-(11)-TTGCTGTGTG

Gene: Sputcn32_0690: Transcriptional regulator, PadR family
*
Shewanella sp W3-18-1

Site:
position = -75
score = 10.0144
sequence = TTACTGTGTG-(11)-TTGCTGTGTA

Gene: Sputw3181_3480: Transcriptional regulator, PadR family
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
*
Shewanella baltica OS155

Site:
position = -75
score = 10.4253
sequence = TTACTGTGTG-(11)-TTGCTGTGTG

Gene: Sbal_3696: Transcriptional regulator, PadR family
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Transcriptional regulator, PadR family
SO0735
 
Shewanella oneidensis MR-1

Gene: SO_0735: hypothetical inner membrane protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_0691: hypothetical inner membrane protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_3479: hypothetical inner membrane protein
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_3695: hypothetical inner membrane protein
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
hypothetical inner membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD