Regulog SO0734 - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	PadR
Regulation mode:	repressor
Biological process:
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - PadR

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	2	1
Shewanella putrefaciens CN-32	2	1
Shewanella sp W3-18-1	2	1
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155	2	1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
SO0734	* Shewanella oneidensis MR-1 Site: position = -74 score = 10.4253 sequence = TTACTGTGTG-(11)-TTGCTGTGTG Gene: SO_0734: Transcriptional regulator, PadR family	* Shewanella putrefaciens CN-32 Site: position = -61 score = 10.4253 sequence = TTACTGTGTG-(11)-TTGCTGTGTG Gene: Sputcn32_0690: Transcriptional regulator, PadR family	* Shewanella sp W3-18-1 Site: position = -75 score = 10.0144 sequence = TTACTGTGTG-(11)-TTGCTGTGTA Gene: Sputw3181_3480: Transcriptional regulator, PadR family	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	* Shewanella baltica OS155 Site: position = -75 score = 10.4253 sequence = TTACTGTGTG-(11)-TTGCTGTGTG Gene: Sbal_3696: Transcriptional regulator, PadR family	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Transcriptional regulator, PadR family
SO0735	Shewanella oneidensis MR-1 Gene: SO_0735: hypothetical inner membrane protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_0691: hypothetical inner membrane protein	Shewanella sp W3-18-1 Gene: Sputw3181_3479: hypothetical inner membrane protein	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155 Gene: Sbal_3695: hypothetical inner membrane protein	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	hypothetical inner membrane protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SO0734 - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --