Regulog ArgR - Listeriaceae
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ArgR
- By taxonomy - Listeriaceae
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Listeria innocua Clip11262 | 7 | 2 |
| Listeria monocytogenes EGD-e | 7 | 2 |
| Listeria seeligeri serovar 1/2b str. SLCC3954 | 7 | 2 |
| Listeria welshimeri serovar 6b str. SLCC5334 | 7 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| argC |
*
Listeria innocua Clip11262 Site: position = -88 score = 4.16892 sequence = TTAAATATTAATAAAA Site: position = -62 score = 4.53536 sequence = CATTATAAATATACAT Gene: lin1633: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Listeria monocytogenes EGD-e Site: position = -63 score = 4.53536 sequence = CATTATAAATATACAT Site: position = -89 score = 4.16892 sequence = TTAAATATTAATAAAA Gene: lmo1591: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -103 score = 4.48253 sequence = ATGCATAAAAATGCTT Site: position = -62 score = 4.53536 sequence = CATTATAAATATACAT Gene: lse_1507: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -62 score = 4.82725 sequence = CTTTATAAATATACAT Gene: lwe1604: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| argJ |
Gene: lin1632: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: lmo1590: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: lse_1506: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: lwe1603: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
| argB |
Gene: lin1631: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: lmo1589: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: lse_1505: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: lwe1602: Acetylglutamate kinase (EC 2.7.2.8) |
Acetylglutamate kinase (EC 2.7.2.8) |
| argD |
Gene: lin1630: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: lmo1588: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: lse_1504: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: lwe1601: Acetylornithine aminotransferase (EC 2.6.1.11) |
Acetylornithine aminotransferase (EC 2.6.1.11) |
| argF |
Gene: lin1629: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: lmo1587: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: lse_1503: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: lwe1600: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Ornithine carbamoyltransferase (EC 2.1.3.3) |
| CRON 2. | |||||
| argG |
*
Listeria innocua Clip11262 Site: position = -114 score = 4.45377 sequence = ATGTATTTTTAATCAT Site: position = -50 score = 4.36664 sequence = GTTAATATAAATACAA Site: position = -30 score = 4.88805 sequence = TTGTATATTTATGAAT Gene: lin2195: Argininosuccinate synthase (EC 6.3.4.5) |
*
Listeria monocytogenes EGD-e Site: position = -30 score = 4.88805 sequence = TTGTATATTTATGAAT Site: position = -50 score = 4.36664 sequence = GTTAATATAAATACAA Site: position = -114 score = 4.53386 sequence = ATGTATTTTTAAGCAT Gene: lmo2090: Argininosuccinate synthase (EC 6.3.4.5) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -50 score = 4.36664 sequence = GTTAATATAAATACAA Site: position = -114 score = 4.64615 sequence = ATGTATTTTTAAACAT Site: position = -30 score = 4.88805 sequence = TTGTATATTTATGAAT Gene: lse_2080: hypothetical protein |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -30 score = 4.88805 sequence = TTGTATATTTATGAAT Site: position = -114 score = 4.64615 sequence = ATGTATTTTTAAACAT Site: position = -50 score = 4.36664 sequence = GTTAATATAAATACAA Gene: lwe2111: Argininosuccinate synthase (EC 6.3.4.5) |
Argininosuccinate synthase (EC 6.3.4.5) |
| argH |
Gene: lin2196: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: lmo2091: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: lse_2081: hypothetical protein |
Gene: lwe2112: Argininosuccinate lyase (EC 4.3.2.1) |
Argininosuccinate lyase (EC 4.3.2.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |