Regulog ArgR - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | |
| Biological process: | Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ArgR
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidothermus cellulolyticus 11B | 8 | 1 |
| Frankia sp. CcI3 | 8 | 1 |
| Frankia sp. EAN1pec | 8 | 1 |
| Nakamurella multipartita DSM 44233 | 8 | 1 |
| Actinosynnema mirum DSM 43827 | 7 | 2 |
| Saccharomonospora viridis DSM 43017 | 9 | 2 |
| Saccharopolyspora erythraea NRRL 2338 | 9 | 2 |
| Nocardioides sp. JS614 | 8 | 1 |
| Propionibacterium acnes KPA171202 | 6 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| argC |
*
Acidothermus cellulolyticus 11B Site: position = -163 score = 4.78915 sequence = TTGTATAGTTATGCAG Gene: Acel_1263: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Frankia sp. CcI3 Site: position = -38 score = 4.36838 sequence = TTGCATGATCATGAGT Gene: Francci3_3175: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Frankia sp. EAN1pec Site: position = 0 score = 4.06277 sequence = GTGTATAAAGTTGCAG Gene: Franean1_1737: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Nakamurella multipartita DSM 44233 Site: position = -52 score = 4.78742 sequence = CTGGATAACCATGCAT Gene: Namu_4131: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Actinosynnema mirum DSM 43827 Site: position = -16 score = 4.77179 sequence = GTGCATACTTATCCGC Gene: Amir_5456: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Saccharomonospora viridis DSM 43017 Site: position = -16 score = 5.13251 sequence = GTGCATAATCATTCGC Gene: Svir_25630: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -16 score = 5.18403 sequence = GTGCATAATCATCCGC Gene: SACE_5263: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Nocardioides sp. JS614 Site: position = -10 score = 4.96792 sequence = CTGTATAGTCATGCAC Gene: Noca_2468: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Propionibacterium acnes KPA171202 Site: position = 59 score = 5.17652 sequence = GTGTATAAATATGCAC Gene: PPA1350: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| argJ |
Gene: Acel_1262: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Francci3_3174: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
2
Frankia sp. EAN1pec Gene: Franean1_4506: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) Gene: Franean1_1738: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Namu_4130: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Amir_5455: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
*2
Saccharomonospora viridis DSM 43017 Site: position = -74 score = 4.91509 sequence = GTGCATAATGATTCAT Gene: Svir_33310: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) Gene: Svir_25620: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: SACE_5261: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Noca_2469: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: PPA1349: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
| argB |
Gene: Acel_1261: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Francci3_3173: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Franean1_1739: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Namu_4129: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Amir_5454: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Svir_25610: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: SACE_5260: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Noca_2470: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: PPA1348: Acetylglutamate kinase (EC 2.7.2.8) |
Acetylglutamate kinase (EC 2.7.2.8) |
| argD |
Gene: Acel_1260: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Francci3_3172: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Franean1_1740: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Namu_4128: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Amir_5453: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Svir_25600: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: SACE_5259: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Noca_2471: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: PPA1347: Acetylornithine aminotransferase (EC 2.6.1.11) |
Acetylornithine aminotransferase (EC 2.6.1.11) |
| argF |
Gene: Acel_1259: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Francci3_3171: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Franean1_1741: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Namu_4127: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Amir_5452: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Svir_25590: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: SACE_5258: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Noca_2472: Ornithine carbamoyltransferase (EC 2.1.3.3) |
|
Ornithine carbamoyltransferase (EC 2.1.3.3) |
| argR |
Gene: Acel_1258: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Gene: Francci3_3170: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Gene: Franean1_1742: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Gene: Namu_4126: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Gene: Amir_5451: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Gene: Svir_25580: Arginine metabolism transcriptional regulator ArgR, ArgR family |
2
Saccharopolyspora erythraea NRRL 2338 Gene: SACE_5257: Arginine metabolism transcriptional regulator ArgR, ArgR family Gene: SACE_5265: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Gene: Noca_2473: Arginine metabolism transcriptional regulator ArgR, ArgR family |
2
Propionibacterium acnes KPA171202 Gene: PPA1405: Arginine metabolism transcriptional regulator ArgR, ArgR family Gene: PPA0586: Arginine metabolism transcriptional regulator ArgR, ArgR family |
Arginine metabolism transcriptional regulator ArgR, ArgR family |
| argG |
Gene: Acel_1257: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: Francci3_3169: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: Franean1_1743: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: Namu_4125: Argininosuccinate synthase (EC 6.3.4.5) |
*2
Actinosynnema mirum DSM 43827 Gene: Amir_5450: Argininosuccinate synthase (EC 6.3.4.5) Site: position = -36 score = 5.08629 sequence = GTGAATGATCATGCAT Site: position = -16 score = 4.433 sequence = GTGCATAATTGTCGAC Gene: Amir_2046: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: Svir_25570: Argininosuccinate synthase (EC 6.3.4.5) |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -37 score = 4.54056 sequence = TTTCATAGTCATGCAG Gene: SACE_2917: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: Noca_2474: Argininosuccinate synthase (EC 6.3.4.5) |
*
Propionibacterium acnes KPA171202 Site: position = -20 score = 4.70596 sequence = CTGCATATATATGCGC Gene: PPA2201: Argininosuccinate synthase (EC 6.3.4.5) |
Argininosuccinate synthase (EC 6.3.4.5) |
| argH |
Gene: Acel_1256: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Francci3_3168: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Franean1_1744: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Namu_4124: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Amir_5449: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Svir_25560: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: SACE_5256: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Noca_2475: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: PPA1346: Argininosuccinate lyase (EC 4.3.2.1) |
Argininosuccinate lyase (EC 4.3.2.1) |
| COG3603 |
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Gene: Svir_25270: Hypothetical protein |
Gene: SACE_5262: Hypothetical protein |
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Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |