Regulog MOCO_RNA_motif - Desulfuromonadales
| Regulator type: | RNA regulatory element |
| Name: | MOCO_RNA_motif |
| RFAM: | RF01055 |
| Regulation mode: | |
| Biological process: | Molybdopterin biosynthesis; Tungsten homeostasis; Molybdenum homeostasis |
| Effector: | Molybdenum |
| Phylum: | Proteobacteria/Delta |
Member of regulog collections
- By taxonomy - Desulfuromonadales
- By RNA motif - MOCO_RNA_motif
- By effector - Molybdenum
- By pathway - Molybdopterin biosynthesis
- By pathway - Tungsten homeostasis
- By pathway - Molybdenum homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Desulfuromonas acetoxidans DSM 684 | 6 | 3 |
| Geobacter lovleyi SZ | ||
| Geobacter metallireducens GS-15 | 11 | 3 |
| Geobacter sp. FRC-32 | 9 | 4 |
| Geobacter sp. M21 | 7 | 3 |
| Geobacter sulfurreducens PCA | 7 | 1 |
| Geobacter uraniumreducens Rf4 | 9 | 3 |
| Pelobacter carbinolicus str. DSM 2380 | 7 | 5 |
| Pelobacter propionicus DSM 2379 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| aor2 |
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*
Pelobacter carbinolicus str. DSM 2380 Site: position = -151 score = 75.26 sequence = GTACAGAACACGTCT... Gene: Pcar_2514: Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5) |
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Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5) |
| CRON 2. | ||||||||||
| aor3 |
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*
Geobacter uraniumreducens Rf4 Site: position = -155 score = 68.6 sequence = CACACCTGTTTTTCT... Gene: Gura_3550: Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5) |
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Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5) |
| CRON 3. | ||||||||||
| modA |
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*
Pelobacter carbinolicus str. DSM 2380 Site: position = -157 score = 21.2 sequence = CCTATGTGTTCCTCC... Gene: Pcar_2782: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) |
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Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) |
| modB |
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Gene: Pcar_2783: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) |
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Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) |
| modC |
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Gene: Pcar_2784: Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
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Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
| CRON 4. | ||||||||||
| moaE |
2
Desulfuromonas acetoxidans DSM 684 Gene: Dace_2119: Molybdenum cofactor biosynthesis protein MoaE Gene: Dace_1761: Molybdenum cofactor biosynthesis protein MoaE |
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*
Geobacter sulfurreducens PCA Site: position = -190 score = 71.34 sequence = TATTTTGTTATCTCC... Gene: GSU2699: Molybdenum cofactor biosynthesis protein MoaE |
*
Geobacter uraniumreducens Rf4 Site: position = -210 score = 71.31 sequence = GAAACTGACGCTCTC... Gene: Gura_3545: Molybdenum cofactor biosynthesis protein MoaE |
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Molybdenum cofactor biosynthesis protein MoaE |
| tupB |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -204 score = 66.24 sequence = AATAGTTACAACTCC... Gene: Dace_1417: ABC-type tungstate transport system, periplasmic binding protein |
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Gene: Gmet_1041: ABC-type tungstate transport system, periplasmic binding protein |
Gene: Geob_0274: ABC-type tungstate transport system, periplasmic binding protein |
Gene: GM21_2528: ABC-type tungstate transport system, periplasmic binding protein |
Gene: GSU2700: ABC-type tungstate transport system, periplasmic binding protein |
Gene: Gura_3544: ABC-type tungstate transport system, periplasmic binding protein |
Gene: Pcar_0675: ABC-type tungstate transport system, periplasmic binding protein |
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ABC-type tungstate transport system, periplasmic binding protein |
| tupA |
Gene: Dace_1418: ABC-type tungstate transport system, permease protein |
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Gene: Gmet_1040: ABC-type tungstate transport system, permease protein |
*
Geobacter sp. FRC-32 Site: position = -274 score = 62.29 sequence = TTAAAAACTAAATCT... Gene: Geob_1629: ABC-type tungstate transport system, permease protein |
Gene: GM21_2527: ABC-type tungstate transport system, permease protein |
Gene: GSU2701: ABC-type tungstate transport system, permease protein |
Gene: Gura_3543: ABC-type tungstate transport system, permease protein |
Gene: Pcar_0928: ABC-type tungstate transport system, permease protein |
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ABC-type tungstate transport system, permease protein |
| tupC |
Gene: Dace_1419: ABC-type tungstate transport system, ATP-binding protein |
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Gene: Gmet_1039: ABC-type tungstate transport system, ATP-binding protein |
2
Geobacter sp. FRC-32 Gene: Geob_1628: ABC-type tungstate transport system, ATP-binding protein Gene: Geob_0275: ABC-type tungstate transport system, ATP-binding protein |
Gene: GM21_2526: ABC-type tungstate transport system, ATP-binding protein |
Gene: GSU2702: ABC-type tungstate transport system, ATP-binding protein |
Gene: Gura_3542: ABC-type tungstate transport system, ATP-binding protein |
Gene: Pcar_0927: ABC-type tungstate transport system, ATP-binding protein |
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ABC-type tungstate transport system, ATP-binding protein |
| moeA |
Gene: Dace_1420: Molybdopterin biosynthesis protein MoeA |
3
Geobacter lovleyi SZ Gene: Glov_0210: Molybdopterin biosynthesis protein MoeA Gene: Glov_0893: Molybdopterin biosynthesis protein MoeA Gene: Glov_3585: Molybdopterin biosynthesis protein MoeA |
3
Geobacter metallireducens GS-15 Gene: Gmet_1038: Molybdopterin biosynthesis protein MoeA Gene: Gmet_1804: Molybdopterin biosynthesis protein MoeA Gene: Gmet_0336: Molybdopterin biosynthesis protein MoeA |
Gene: Geob_1627: Molybdopterin biosynthesis protein MoeA |
*2
Geobacter sp. M21 Gene: GM21_2072: Molybdopterin biosynthesis protein MoeA Site: position = -196 score = 73.82 sequence = TTAAGCAAATAGTCT... Gene: GM21_1950: Molybdopterin biosynthesis protein MoeA |
Gene: GSU2703: Molybdopterin biosynthesis protein MoeA |
3
Geobacter uraniumreducens Rf4 Gene: Gura_0462: Molybdopterin biosynthesis protein MoeA Gene: Gura_3541: Molybdopterin biosynthesis protein MoeA Gene: Gura_3393: Molybdopterin biosynthesis protein MoeA |
*
Pelobacter carbinolicus str. DSM 2380 Site: position = -461 score = 73.62 sequence = CAAGAATGCGCCTCC... Gene: Pcar_0256: Molybdopterin biosynthesis protein MoeA |
Gene: Ppro_0454: Molybdopterin biosynthesis protein MoeA |
Molybdopterin biosynthesis protein MoeA |
| moaC |
2
Desulfuromonas acetoxidans DSM 684 Gene: Dace_2120: Molybdenum cofactor biosynthesis protein MoaC Gene: Dace_1762: Molybdenum cofactor biosynthesis protein MoaC |
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Gene: Gmet_1037: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Geob_1626: Molybdenum cofactor biosynthesis protein MoaC |
Gene: GM21_1949: Molybdenum cofactor biosynthesis protein MoaC |
Gene: GSU2704: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Gura_3540: Molybdenum cofactor biosynthesis protein MoaC |
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Molybdenum cofactor biosynthesis protein MoaC |
| moaB |
2
Desulfuromonas acetoxidans DSM 684 Gene: Dace_2121: Molybdenum cofactor biosynthesis protein MoaB Gene: Dace_1763: Molybdenum cofactor biosynthesis protein MoaB |
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Gene: Gmet_1036: Molybdenum cofactor biosynthesis protein MoaB |
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Gene: GM21_1948: Molybdenum cofactor biosynthesis protein MoaB |
Gene: GSU2705: Molybdenum cofactor biosynthesis protein MoaB |
Gene: Gura_3539: Molybdenum cofactor biosynthesis protein MoaB |
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Molybdenum cofactor biosynthesis protein MoaB |
| tupP |
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*
Geobacter metallireducens GS-15 Site: position = -242 score = 67.39 sequence = ATACTAGTTTTTTCT... Gene: Gmet_1042: Predicted molybdate/tungstate porin |
*
Geobacter sp. FRC-32 Site: position = -429 score = 70.28 sequence = GCTCGAACTTTCTCC... Site: position = -218 score = 68.7 sequence = GATTCTCAACTCTCC... Gene: Geob_0273: Predicted molybdate/tungstate porin |
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Predicted molybdate/tungstate porin |
| aor |
*2
Desulfuromonas acetoxidans DSM 684 Site: position = -157 score = 77.67 sequence = GTACTATCAAGATCT... Gene: Dace_1415: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -154 score = 62.46 sequence = CCAGCCCTTAAATCT... Gene: Dace_0663: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
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*2
Geobacter metallireducens GS-15 Site: position = -149 score = 69.43 sequence = AACAACCAACACTCT... Gene: Gmet_1045: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -467 score = 77.07 sequence = TTTAAAACCGTCTCC... Gene: Gmet_1802: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
*2
Geobacter sp. FRC-32 Site: position = -148 score = 67.5 sequence = TCATGTATCATCTCC... Gene: Geob_0269: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -140 score = 70.32 sequence = TGACAAAACAAGTCT... Gene: Geob_0113: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
*3
Geobacter sp. M21 Gene: GM21_2842: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -153 score = 59.11 sequence = GGTTTTTGAATCTCC... Gene: GM21_2933: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Gene: GM21_1609: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
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*
Geobacter uraniumreducens Rf4 Site: position = -149 score = 73.72 sequence = AAACACATCATCTCC... Gene: Gura_2421: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
*3
Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_0254: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -156 score = 75.23 sequence = TGCGCGGCAGTCTCC... Gene: Pcar_0665: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -156 score = 73.2 sequence = CAATACTACCAATCT... Gene: Pcar_0456: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
3
Pelobacter propionicus DSM 2379 Gene: Ppro_0465: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Gene: Ppro_0888: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Gene: Ppro_0580: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) |
| COG0437 |
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Gene: Gmet_1803: Fe-S-cluster-containing hydrogenase components |
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Gene: GM21_1610: Fe-S-cluster-containing hydrogenase components |
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Fe-S-cluster-containing hydrogenase components |
| GM21_1608 |
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*
Geobacter sp. M21 Site: position = -290 score = 72.24 sequence = GAAAAATCAGTCTCC... Gene: GM21_1608: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |