Regulog MOCO_RNA_motif - Desulfuromonadales

Properties
Regulator type:	RNA regulatory element
Name:	MOCO_RNA_motif
RFAM:	RF01055
Regulation mode:
Biological process:	Molybdopterin biosynthesis; Tungsten homeostasis; Molybdenum homeostasis
Effector:	Molybdenum
Phylum:	Proteobacteria/Delta

Member of regulog collections

By taxonomy - Desulfuromonadales
By RNA motif - MOCO_RNA_motif
By effector - Molybdenum
By pathway - Molybdopterin biosynthesis
By pathway - Tungsten homeostasis
By pathway - Molybdenum homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Desulfuromonas acetoxidans DSM 684	6	3
Geobacter lovleyi SZ
Geobacter metallireducens GS-15	11	3
Geobacter sp. FRC-32	9	4
Geobacter sp. M21	7	3
Geobacter sulfurreducens PCA	7	1
Geobacter uraniumreducens Rf4	9	3
Pelobacter carbinolicus str. DSM 2380	7	5
Pelobacter propionicus DSM 2379

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
aor2	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	* Pelobacter carbinolicus str. DSM 2380 Site: position = -151 score = 75.26 sequence = GTACAGAACACGTCT... Gene: Pcar_2514: Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)	Pelobacter propionicus DSM 2379	Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)

CRON 2.
aor3	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter sulfurreducens PCA	* Geobacter uraniumreducens Rf4 Site: position = -155 score = 68.6 sequence = CACACCTGTTTTTCT... Gene: Gura_3550: Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)

CRON 3.
modA	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	* Pelobacter carbinolicus str. DSM 2380 Site: position = -157 score = 21.2 sequence = CCTATGTGTTCCTCC... Gene: Pcar_2782: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Pelobacter propionicus DSM 2379	Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)
modB	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_2783: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	Pelobacter propionicus DSM 2379	Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
modC	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_2784: Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	Pelobacter propionicus DSM 2379	Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)

CRON 4.
moaE	2 Desulfuromonas acetoxidans DSM 684 Gene: Dace_2119: Molybdenum cofactor biosynthesis protein MoaE Gene: Dace_1761: Molybdenum cofactor biosynthesis protein MoaE	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	Geobacter sp. M21	* Geobacter sulfurreducens PCA Site: position = -190 score = 71.34 sequence = TATTTTGTTATCTCC... Gene: GSU2699: Molybdenum cofactor biosynthesis protein MoaE	* Geobacter uraniumreducens Rf4 Site: position = -210 score = 71.31 sequence = GAAACTGACGCTCTC... Gene: Gura_3545: Molybdenum cofactor biosynthesis protein MoaE	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	Molybdenum cofactor biosynthesis protein MoaE
tupB	* Desulfuromonas acetoxidans DSM 684 Site: position = -204 score = 66.24 sequence = AATAGTTACAACTCC... Gene: Dace_1417: ABC-type tungstate transport system, periplasmic binding protein	Geobacter lovleyi SZ	Geobacter metallireducens GS-15 Gene: Gmet_1041: ABC-type tungstate transport system, periplasmic binding protein	Geobacter sp. FRC-32 Gene: Geob_0274: ABC-type tungstate transport system, periplasmic binding protein	Geobacter sp. M21 Gene: GM21_2528: ABC-type tungstate transport system, periplasmic binding protein	Geobacter sulfurreducens PCA Gene: GSU2700: ABC-type tungstate transport system, periplasmic binding protein	Geobacter uraniumreducens Rf4 Gene: Gura_3544: ABC-type tungstate transport system, periplasmic binding protein	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_0675: ABC-type tungstate transport system, periplasmic binding protein	Pelobacter propionicus DSM 2379	ABC-type tungstate transport system, periplasmic binding protein
tupA	Desulfuromonas acetoxidans DSM 684 Gene: Dace_1418: ABC-type tungstate transport system, permease protein	Geobacter lovleyi SZ	Geobacter metallireducens GS-15 Gene: Gmet_1040: ABC-type tungstate transport system, permease protein	* Geobacter sp. FRC-32 Site: position = -274 score = 62.29 sequence = TTAAAAACTAAATCT... Gene: Geob_1629: ABC-type tungstate transport system, permease protein	Geobacter sp. M21 Gene: GM21_2527: ABC-type tungstate transport system, permease protein	Geobacter sulfurreducens PCA Gene: GSU2701: ABC-type tungstate transport system, permease protein	Geobacter uraniumreducens Rf4 Gene: Gura_3543: ABC-type tungstate transport system, permease protein	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_0928: ABC-type tungstate transport system, permease protein	Pelobacter propionicus DSM 2379	ABC-type tungstate transport system, permease protein
tupC	Desulfuromonas acetoxidans DSM 684 Gene: Dace_1419: ABC-type tungstate transport system, ATP-binding protein	Geobacter lovleyi SZ	Geobacter metallireducens GS-15 Gene: Gmet_1039: ABC-type tungstate transport system, ATP-binding protein	2 Geobacter sp. FRC-32 Gene: Geob_1628: ABC-type tungstate transport system, ATP-binding protein Gene: Geob_0275: ABC-type tungstate transport system, ATP-binding protein	Geobacter sp. M21 Gene: GM21_2526: ABC-type tungstate transport system, ATP-binding protein	Geobacter sulfurreducens PCA Gene: GSU2702: ABC-type tungstate transport system, ATP-binding protein	Geobacter uraniumreducens Rf4 Gene: Gura_3542: ABC-type tungstate transport system, ATP-binding protein	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_0927: ABC-type tungstate transport system, ATP-binding protein	Pelobacter propionicus DSM 2379	ABC-type tungstate transport system, ATP-binding protein
moeA	Desulfuromonas acetoxidans DSM 684 Gene: Dace_1420: Molybdopterin biosynthesis protein MoeA	3 Geobacter lovleyi SZ Gene: Glov_0210: Molybdopterin biosynthesis protein MoeA Gene: Glov_0893: Molybdopterin biosynthesis protein MoeA Gene: Glov_3585: Molybdopterin biosynthesis protein MoeA	3 Geobacter metallireducens GS-15 Gene: Gmet_1038: Molybdopterin biosynthesis protein MoeA Gene: Gmet_1804: Molybdopterin biosynthesis protein MoeA Gene: Gmet_0336: Molybdopterin biosynthesis protein MoeA	Geobacter sp. FRC-32 Gene: Geob_1627: Molybdopterin biosynthesis protein MoeA	2 Geobacter sp. M21* Gene: GM21_2072: Molybdopterin biosynthesis protein MoeA Site: position = -196 score = 73.82 sequence = TTAAGCAAATAGTCT... Gene: GM21_1950: Molybdopterin biosynthesis protein MoeA	Geobacter sulfurreducens PCA Gene: GSU2703: Molybdopterin biosynthesis protein MoeA	3 Geobacter uraniumreducens Rf4 Gene: Gura_0462: Molybdopterin biosynthesis protein MoeA Gene: Gura_3541: Molybdopterin biosynthesis protein MoeA Gene: Gura_3393: Molybdopterin biosynthesis protein MoeA	* Pelobacter carbinolicus str. DSM 2380 Site: position = -461 score = 73.62 sequence = CAAGAATGCGCCTCC... Gene: Pcar_0256: Molybdopterin biosynthesis protein MoeA	Pelobacter propionicus DSM 2379 Gene: Ppro_0454: Molybdopterin biosynthesis protein MoeA	Molybdopterin biosynthesis protein MoeA
moaC	2 Desulfuromonas acetoxidans DSM 684 Gene: Dace_2120: Molybdenum cofactor biosynthesis protein MoaC Gene: Dace_1762: Molybdenum cofactor biosynthesis protein MoaC	Geobacter lovleyi SZ	Geobacter metallireducens GS-15 Gene: Gmet_1037: Molybdenum cofactor biosynthesis protein MoaC	Geobacter sp. FRC-32 Gene: Geob_1626: Molybdenum cofactor biosynthesis protein MoaC	Geobacter sp. M21 Gene: GM21_1949: Molybdenum cofactor biosynthesis protein MoaC	Geobacter sulfurreducens PCA Gene: GSU2704: Molybdenum cofactor biosynthesis protein MoaC	Geobacter uraniumreducens Rf4 Gene: Gura_3540: Molybdenum cofactor biosynthesis protein MoaC	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	Molybdenum cofactor biosynthesis protein MoaC
moaB	2 Desulfuromonas acetoxidans DSM 684 Gene: Dace_2121: Molybdenum cofactor biosynthesis protein MoaB Gene: Dace_1763: Molybdenum cofactor biosynthesis protein MoaB	Geobacter lovleyi SZ	Geobacter metallireducens GS-15 Gene: Gmet_1036: Molybdenum cofactor biosynthesis protein MoaB	Geobacter sp. FRC-32	Geobacter sp. M21 Gene: GM21_1948: Molybdenum cofactor biosynthesis protein MoaB	Geobacter sulfurreducens PCA Gene: GSU2705: Molybdenum cofactor biosynthesis protein MoaB	Geobacter uraniumreducens Rf4 Gene: Gura_3539: Molybdenum cofactor biosynthesis protein MoaB	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	Molybdenum cofactor biosynthesis protein MoaB
tupP	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	* Geobacter metallireducens GS-15 Site: position = -242 score = 67.39 sequence = ATACTAGTTTTTTCT... Gene: Gmet_1042: Predicted molybdate/tungstate porin	* Geobacter sp. FRC-32 Site: position = -429 score = 70.28 sequence = GCTCGAACTTTCTCC... Site: position = -218 score = 68.7 sequence = GATTCTCAACTCTCC... Gene: Geob_0273: Predicted molybdate/tungstate porin	Geobacter sp. M21	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	Predicted molybdate/tungstate porin
aor	2 Desulfuromonas acetoxidans DSM 684* Site: position = -157 score = 77.67 sequence = GTACTATCAAGATCT... Gene: Dace_1415: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -154 score = 62.46 sequence = CCAGCCCTTAAATCT... Gene: Dace_0663: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	Geobacter lovleyi SZ	2 Geobacter metallireducens GS-15* Site: position = -149 score = 69.43 sequence = AACAACCAACACTCT... Gene: Gmet_1045: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -467 score = 77.07 sequence = TTTAAAACCGTCTCC... Gene: Gmet_1802: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	2 Geobacter sp. FRC-32* Site: position = -148 score = 67.5 sequence = TCATGTATCATCTCC... Gene: Geob_0269: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -140 score = 70.32 sequence = TGACAAAACAAGTCT... Gene: Geob_0113: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	3 Geobacter sp. M21* Gene: GM21_2842: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -153 score = 59.11 sequence = GGTTTTTGAATCTCC... Gene: GM21_2933: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Gene: GM21_1609: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	Geobacter sulfurreducens PCA	* Geobacter uraniumreducens Rf4 Site: position = -149 score = 73.72 sequence = AAACACATCATCTCC... Gene: Gura_2421: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	3 Pelobacter carbinolicus str. DSM 2380* Gene: Pcar_0254: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -156 score = 75.23 sequence = TGCGCGGCAGTCTCC... Gene: Pcar_0665: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Site: position = -156 score = 73.2 sequence = CAATACTACCAATCT... Gene: Pcar_0456: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	3 Pelobacter propionicus DSM 2379 Gene: Ppro_0465: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Gene: Ppro_0888: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) Gene: Ppro_0580: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)	Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
COG0437	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15 Gene: Gmet_1803: Fe-S-cluster-containing hydrogenase components	Geobacter sp. FRC-32	Geobacter sp. M21 Gene: GM21_1610: Fe-S-cluster-containing hydrogenase components	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	Fe-S-cluster-containing hydrogenase components
GM21_1608	Desulfuromonas acetoxidans DSM 684	Geobacter lovleyi SZ	Geobacter metallireducens GS-15	Geobacter sp. FRC-32	* Geobacter sp. M21 Site: position = -290 score = 72.24 sequence = GAAAAATCAGTCTCC... Gene: GM21_1608: hypothetical protein	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Pelobacter carbinolicus str. DSM 2380	Pelobacter propionicus DSM 2379	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MOCO_RNA_motif - Desulfuromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --