Regulog MOCO_RNA_motif - Alteromonadales
| Regulator type: | RNA regulatory element |
| Name: | MOCO_RNA_motif |
| RFAM: | RF01055 |
| Regulation mode: | |
| Biological process: | Molybdenum homeostasis; Molybdopterin biosynthesis |
| Effector: | Molybdenum |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Alteromonadales
- By RNA motif - MOCO_RNA_motif
- By effector - Molybdenum
- By pathway - Molybdenum homeostasis
- By pathway - Molybdopterin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Alteromonadales bacterium TW-7 | ||
| Alteromonas macleodii 'Deep ecotype' | 6 | 1 |
| Glaciecola sp. HTCC2999 | ||
| Colwellia psychrerythraea 34H | 9 | 1 |
| Idiomarina baltica OS145 | ||
| Idiomarina loihiensis L2TR | ||
| Pseudoalteromonas atlantica T6c | 8 | 1 |
| Pseudoalteromonas haloplanktis TAC125 | ||
| Pseudoalteromonas tunicata D2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| moaA |
Gene: ATW7_14041: Molybdenum cofactor biosynthesis protein MoaA |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -274 score = 76.3 sequence = AAGGTAACAAAAACT... Gene: MADE_03862: Molybdenum cofactor biosynthesis protein MoaA |
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*
Colwellia psychrerythraea 34H Site: position = -178 score = 52.48 sequence = TTATTTTATTACACC... Gene: CPS_4633: Molybdenum cofactor biosynthesis protein MoaA |
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*
Pseudoalteromonas atlantica T6c Site: position = -177 score = 71.22 sequence = ACAGGTGGTTTAACT... Gene: Patl_2160: Molybdenum cofactor biosynthesis protein MoaA |
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Molybdenum cofactor biosynthesis protein MoaA |
| mobB |
Gene: ATW7_14036: Molybdopterin-guanine dinucleotide biosynthesis protein MobB |
Gene: MADE_03861: Molybdopterin-guanine dinucleotide biosynthesis protein MobB |
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Gene: CPS_4634: Molybdopterin-guanine dinucleotide biosynthesis protein MobB |
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Gene: Patl_2159: Molybdopterin-guanine dinucleotide biosynthesis protein MobB |
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Molybdopterin-guanine dinucleotide biosynthesis protein MobB |
| moaB |
Gene: ATW7_14031: Molybdenum cofactor biosynthesis protein MoaB |
2
Alteromonas macleodii 'Deep ecotype' Gene: MADE_01047: Molybdenum cofactor biosynthesis protein MoaB Gene: MADE_03860: Molybdenum cofactor biosynthesis protein MoaB |
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Gene: CPS_4635: Molybdenum cofactor biosynthesis protein MoaB |
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Gene: Patl_2158: Molybdenum cofactor biosynthesis protein MoaB |
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Molybdenum cofactor biosynthesis protein MoaB |
| moaC |
Gene: ATW7_14026: Molybdenum cofactor biosynthesis protein MoaC |
2
Alteromonas macleodii 'Deep ecotype' Gene: MADE_03859: Molybdenum cofactor biosynthesis protein MoaC Gene: MADE_01048: Molybdenum cofactor biosynthesis protein MoaC |
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Gene: CPS_4636: Molybdenum cofactor biosynthesis protein MoaC |
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Gene: Patl_2157: Molybdenum cofactor biosynthesis protein MoaC |
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Molybdenum cofactor biosynthesis protein MoaC |
| moaD |
Gene: ATW7_14021: Molybdenum cofactor biosynthesis protein MoaD |
Gene: MADE_03858: Molybdenum cofactor biosynthesis protein MoaD |
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Gene: CPS_4637: Molybdenum cofactor biosynthesis protein MoaD |
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Gene: Patl_2156: Molybdenum cofactor biosynthesis protein MoaD |
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Molybdenum cofactor biosynthesis protein MoaD |
| moaE |
Gene: ATW7_14016: Molybdenum cofactor biosynthesis protein MoaE |
2
Alteromonas macleodii 'Deep ecotype' Gene: MADE_03857: Molybdenum cofactor biosynthesis protein MoaE Gene: MADE_01050: Molybdenum cofactor biosynthesis protein MoaE |
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Gene: CPS_4638: Molybdenum cofactor biosynthesis protein MoaE |
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Gene: Patl_2155: Molybdenum cofactor biosynthesis protein MoaE |
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Molybdenum cofactor biosynthesis protein MoaE |
| modA |
|
2
Alteromonas macleodii 'Deep ecotype' Gene: MADE_01051: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Gene: MADE_03851: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) |
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Gene: CPS_4639: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) |
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Gene: Patl_2154: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) |
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Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) |
| modB |
|
2
Alteromonas macleodii 'Deep ecotype' Gene: MADE_01052: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Gene: MADE_03850: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) |
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Gene: CPS_4640: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) |
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Gene: Patl_2153: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) |
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Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) |
| modC |
|
2
Alteromonas macleodii 'Deep ecotype' Gene: MADE_01053: Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Gene: MADE_03849: Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
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Gene: CPS_4641: Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
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Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |