Regulog ArgR - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 8 | 3 |
| Blautia hansenii DSM 20583 | 8 | 3 |
| Bryantella formatexigens DSM 14469 | 6 | 2 |
| Clostridiales bacterium 1_7_47_FAA | 7 | 3 |
| Clostridium bolteae ATCC BAA-613 | 7 | 3 |
| Clostridium nexile DSM 1787 | 5 | 1 |
| Clostridium scindens ATCC 35704 | 6 | 2 |
| Dorea formicigenerans ATCC 27755 | 6 | 2 |
| Dorea longicatena DSM 13814 | 6 | 2 |
| Eubacterium eligens ATCC 27750 | 8 | 3 |
| Eubacterium rectale ATCC 33656 | 7 | 3 |
| Roseburia intestinalis L1-82 | 9 | 3 |
| Ruminococcus gnavus ATCC 29149 | 11 | 3 |
| Ruminococcus lactaris ATCC 29176 | 8 | 3 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| argG |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -115 score = 5.08586 sequence = TTTTATATTTATTCAT Gene: BACPEC_00819: Argininosuccinate synthase (EC 6.3.4.5) |
*
Blautia hansenii DSM 20583 Site: position = -127 score = 4.6524 sequence = ATGTATATTTATTCTA Site: position = -65 score = 4.79122 sequence = TTGCATAATTATTTAT Gene: BLAHAN_01532: Argininosuccinate synthase (EC 6.3.4.5) |
*
Bryantella formatexigens DSM 14469 Site: position = -214 score = 5.2624 sequence = ATGCATAACTATACAT Site: position = -141 score = 5.48982 sequence = ATGCATATTTATAAAT Gene: BRYFOR_01002: Argininosuccinate synthase (EC 6.3.4.5) |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -136 score = 5.52514 sequence = TTTCATAATTATACAT Site: position = -53 score = 5.24372 sequence = TTGTATATTTATGAAA Gene: Cbac1_010100015903: Argininosuccinate synthase (EC 6.3.4.5) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -10 score = 5.24372 sequence = TTGTATATTTATGAAA Site: position = -93 score = 5.52514 sequence = TTTCATAATTATACAT Gene: CLOBOL_01168: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: CLONEX_00312: Argininosuccinate synthase (EC 6.3.4.5) |
*
Clostridium scindens ATCC 35704 Site: position = -107 score = 5.24372 sequence = TTGCATATTTATAAAA Gene: CLOSCI_01777: Argininosuccinate synthase (EC 6.3.4.5) |
*
Dorea formicigenerans ATCC 27755 Site: position = -103 score = 5.3045 sequence = TTGCATATTTATGAAT Gene: DORFOR_00300: Argininosuccinate synthase (EC 6.3.4.5) |
*
Dorea longicatena DSM 13814 Site: position = -199 score = 4.99409 sequence = ATGCATATTTTTGCAT Site: position = -147 score = 5.40209 sequence = TTGCATAATTATAAAA Gene: DORLON_01501: Argininosuccinate synthase (EC 6.3.4.5) |
*
Eubacterium eligens ATCC 27750 Site: position = -128 score = 4.64405 sequence = TTGTATATTAATGTAT Site: position = -149 score = 5.55208 sequence = ATTTATATTTATACAT Gene: EUBELI_00592: Argininosuccinate synthase (EC 6.3.4.5) |
*
Eubacterium rectale ATCC 33656 Site: position = -155 score = 5.88785 sequence = ATGTATAATTATACAT Gene: EUBREC_1607: Argininosuccinate synthase (EC 6.3.4.5) |
*
Roseburia intestinalis L1-82 Site: position = -235 score = 5.70253 sequence = TTGCATAATTATACAT Site: position = -130 score = 5.15785 sequence = ATGTATTTTTATGAAT Gene: ROSINTL182_02538: Argininosuccinate synthase (EC 6.3.4.5) |
*2
Ruminococcus gnavus ATCC 29149 Site: position = -119 score = 5.3045 sequence = TTGCATATTTATGAAT Gene: RUMGNA_02387: Argininosuccinate synthase (EC 6.3.4.5) Gene: RUMGNA_02388: Argininosuccinate synthase (EC 6.3.4.5) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -204 score = 5.2122 sequence = TTGTATTTTTATGCAT Site: position = -194 score = 4.83572 sequence = ATGCATATATTTGCAT Site: position = -142 score = 5.40209 sequence = TTGCATAATTATAAAA Gene: RUMLAC_00572: Argininosuccinate synthase (EC 6.3.4.5) |
Argininosuccinate synthase (EC 6.3.4.5) |
| CRON 2. | |||||||||||||||
| argC |
*
Bacteroides pectinophilus ATCC 43243 Site: position = 0 score = 5.08586 sequence = ATGAATAAATATAAAA Gene: BACPEC_00818: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Blautia hansenii DSM 20583 Site: position = -86 score = 5.70253 sequence = ATGTATAATTATGCAA Gene: BLAHAN_03081: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Bryantella formatexigens DSM 14469 Site: position = -87 score = 5.48982 sequence = ATTTATAAATATGCAT Site: position = -14 score = 5.2624 sequence = ATGTATAGTTATGCAT Gene: BRYFOR_01003: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -278 score = 5.24372 sequence = TTTCATAAATATACAA Site: position = -195 score = 5.52514 sequence = ATGTATAATTATGAAA Site: position = -58 score = 4.53579 sequence = ATGAAGAAATATGAAT Gene: Cbac1_010100015913: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -211 score = 5.24372 sequence = TTTCATAAATATACAA Site: position = -128 score = 5.52514 sequence = ATGTATAATTATGAAA Gene: CLOBOL_01170: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Clostridium nexile DSM 1787 Site: position = -129 score = 5.13935 sequence = ATGTATACTTATGCAA Gene: CLONEX_00308: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Clostridium scindens ATCC 35704 Site: position = -113 score = 5.70253 sequence = ATGTATAATTATGCAA Gene: CLOSCI_01771: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Dorea formicigenerans ATCC 27755 Site: position = -75 score = 4.55466 sequence = TTGTATAATCATGCAC Gene: DORFOR_02487: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Dorea longicatena DSM 13814 Site: position = -157 score = 5.13935 sequence = ATGTATACTTATGCAA Site: position = -38 score = 4.7539 sequence = ATTTATAAAAATTCAA Gene: DORLON_01497: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Eubacterium eligens ATCC 27750 Site: position = -164 score = 4.64405 sequence = ATACATTAATATACAA Site: position = -143 score = 5.55208 sequence = ATGTATAAATATAAAT Gene: EUBELI_00593: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Eubacterium rectale ATCC 33656 Site: position = -68 score = 5.88785 sequence = ATGTATAATTATACAT Gene: EUBREC_1608: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Roseburia intestinalis L1-82 Site: position = -266 score = 5.15785 sequence = ATTCATAAAAATACAT Site: position = -161 score = 5.70253 sequence = ATGTATAATTATGCAA Gene: ROSINTL182_02536: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Ruminococcus gnavus ATCC 29149 Site: position = -111 score = 5.13935 sequence = ATGTATACTTATGCAA Gene: RUMGNA_02382: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -200 score = 5.37057 sequence = ATGTATTATTATGCAA Gene: RUMLAC_00579: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| GNAT |
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Gene: BLAHAN_03080: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: BRYFOR_01004: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: Cbac1_010100015918: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: CLOBOL_01171: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: CLONEX_00307: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: CLOSCI_01770: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: DORFOR_02486: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: DORLON_01496: Acetyltransferase, GNAT family (EC 2.3.1.-) |
|
Gene: EUBREC_1609: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: ROSINTL182_02535: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: RUMGNA_02381: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Gene: RUMLAC_00580: Acetyltransferase, GNAT family (EC 2.3.1.-) |
Acetyltransferase, GNAT family (EC 2.3.1.-) |
| argJ |
Gene: BACPEC_00817: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: BLAHAN_03079: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: BRYFOR_01005: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Cbac1_010100015923: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: CLOBOL_01172: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: CLONEX_00306: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: CLOSCI_01769: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: DORFOR_02485: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: DORLON_01495: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: EUBELI_00594: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: EUBREC_1176: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: ROSINTL182_02534: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
2
Ruminococcus gnavus ATCC 29149 Gene: RUMGNA_02380: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) Gene: RUMGNA_02379: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: RUMLAC_00581: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
| argB |
Gene: BACPEC_00816: Acetylglutamate kinase (EC 2.7.2.8) |
2
Blautia hansenii DSM 20583 Gene: BLAHAN_03078: Acetylglutamate kinase (EC 2.7.2.8) Gene: BLAHAN_03077: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: BRYFOR_01006: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Cbac1_010100015928: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: CLOBOL_01173: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: CLONEX_00305: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: CLOSCI_01768: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: DORFOR_02484: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: DORLON_01494: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: EUBELI_00595: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: EUBREC_1610: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: ROSINTL182_02533: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: RUMGNA_02378: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: RUMLAC_00582: Acetylglutamate kinase (EC 2.7.2.8) |
Acetylglutamate kinase (EC 2.7.2.8) |
| argD |
Gene: BACPEC_00815: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: BLAHAN_03076: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: BRYFOR_01007: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Cbac1_010100015933: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: CLOBOL_01174: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: CLONEX_00304: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: CLOSCI_01767: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: DORFOR_02483: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: DORLON_01493: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: EUBELI_00596: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: EUBREC_1611: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: ROSINTL182_02532: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: RUMGNA_02377: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: RUMLAC_00583: Acetylornithine aminotransferase (EC 2.6.1.11) |
Acetylornithine aminotransferase (EC 2.6.1.11) |
| COG2182 |
Gene: BACPEC_00814: Periplasmic binding protein-like II |
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Gene: EUBELI_00597: Periplasmic binding protein-like II |
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Gene: ROSINTL182_02531: Periplasmic binding protein-like II |
Gene: RUMGNA_03448: Periplasmic binding protein-like II |
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Periplasmic binding protein-like II |
| CRON 3. | |||||||||||||||
| carA |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -64 score = 5.33525 sequence = ATGTATTTTTATGCAT Gene: BACPEC_01099: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: BLAHAN_01623: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: BRYFOR_03997: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: Cbac1_010100006718: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLOBOL_02798: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLONEX_00532: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLOSCI_02024: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: DORFOR_00675: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: DORLON_00761: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Eubacterium eligens ATCC 27750 Site: position = -182 score = 5.14994 sequence = ATGCATTTTTATGCAA Gene: EUBELI_20411: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Eubacterium rectale ATCC 33656 Site: position = -207 score = 5.0368 sequence = ATACATAAATATGCAT Site: position = -197 score = 4.91375 sequence = ATGCATATTTATGTAA Gene: EUBREC_0731: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Roseburia intestinalis L1-82 Site: position = -218 score = 5.72948 sequence = ATGTATAAATATACAT Site: position = -208 score = 5.0368 sequence = ATACATAAATATGCAT Gene: ROSINTL182_02626: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: RUMGNA_03619: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -142 score = 5.15768 sequence = CTTTATAATTATACAT Gene: RUMLAC_01975: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
| carB |
Gene: BACPEC_01098: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: BLAHAN_01624: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: BRYFOR_03998: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: Cbac1_010100006713: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLOBOL_02797: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLONEX_00531: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLOSCI_02023: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: DORFOR_00674: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: DORLON_00760: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: EUBELI_20410: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: EUBREC_0732: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: ROSINTL182_02625: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: RUMGNA_03618: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: RUMLAC_01976: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
| CRON 4. | |||||||||||||||
| argF |
Gene: BACPEC_03028: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: BLAHAN_00125: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: BRYFOR_03242: Ornithine carbamoyltransferase (EC 2.1.3.3) |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -66 score = 5.00984 sequence = ATGCATAAAGATGCAT Site: position = -56 score = 5.14665 sequence = ATGCATAAATATTAAT Gene: Cbac1_010100019645: Ornithine carbamoyltransferase (EC 2.1.3.3) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -38 score = 5.00984 sequence = ATGCATAAAGATGCAT Site: position = -28 score = 5.48982 sequence = ATGCATAAATATAAAT Gene: CLOBOL_06058: Ornithine carbamoyltransferase (EC 2.1.3.3) |
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Gene: CLOSCI_00958: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: DORFOR_00383: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: DORLON_00879: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: EUBELI_01677: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: EUBREC_0057: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: ROSINTL182_01226: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: RUMGNA_02788: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: RUMLAC_00058: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Ornithine carbamoyltransferase (EC 2.1.3.3) |
| CRON 5. | |||||||||||||||
| BLAHAN_02346 |
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*
Blautia hansenii DSM 20583 Site: position = -76 score = 5.71045 sequence = ATGTATAATTATAAAT Gene: BLAHAN_02346: hypothetical protein |
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*
Ruminococcus gnavus ATCC 29149 Site: position = -76 score = 5.71045 sequence = ATGTATAATTATAAAT Gene: RUMGNA_01125: hypothetical protein |
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hypothetical protein |
| BLAHAN_02345 |
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Gene: BLAHAN_02345: hypothetical protein |
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Gene: RUMGNA_01124: hypothetical protein |
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hypothetical protein |
| BLAHAN_02344 |
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Gene: BLAHAN_02344: hypothetical protein |
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Gene: RUMGNA_01123: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |