Regulog glnA - Cyanobacteria

Properties
Regulator type:	RNA regulatory element
Name:	glnA
RFAM:	RF01739
Regulation mode:
Biological process:	Nitrogen assimilation
Effector:	L-glutamine
Phylum:	Cyanobacteria

Member of regulog collections

By taxonomy - Cyanobacteria
By RNA motif - glnA
By effector - L-glutamine
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Cyanothece sp. ATCC 51142	2	2
Cyanothece sp. PCC 7425	3	3
Cyanothece sp. PCC 8801	1	1
Gloeobacter violaceus PCC 7421
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120
Prochlorococcus marinus str. MIT 9313	3	1
Synechococcus elongatus PCC 7942	1	1
Synechococcus sp. JA-3-3Ab	1	1
Synechococcus sp. PCC 7002
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803	1	1
Thermosynechococcus elongatus BP-1	2	2
Trichodesmium erythraeum IMS101	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
IF17	2 Cyanothece sp. ATCC 51142* Gene: cce_3088: Glutamine synthetase inactivating factor IF17 Site: position = -117 score = 50.02 sequence = AATCGTTCATCCTTT... Gene: cce_2638: Glutamine synthetase inactivating factor IF17	3 Cyanothece sp. PCC 7425* Site: position = -154 score = 50.42 sequence = TCGTTCATCTCTCCA... Gene: Cyan7425_2387: Glutamine synthetase inactivating factor IF17 Site: position = -130 score = 50.94 sequence = CATCGTTCATCTCCA... Gene: Cyan7425_4644: Glutamine synthetase inactivating factor IF17 Site: position = -132 score = 49.29 sequence = GATCGTTCATCTCTC... Gene: Cyan7425_1393: Glutamine synthetase inactivating factor IF17	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Prochlorococcus marinus str. MIT 9313	* Synechococcus elongatus PCC 7942 Site: position = -94 score = 41.57 sequence = AATCGTTGGCCCAGT... Gene: Synpcc7942_2529: Glutamine synthetase inactivating factor IF17	* Synechococcus sp. JA-3-3Ab Site: position = -188 score = 48.9 sequence = AATCGTTCATCCTCT... Gene: CYA_0922: Glutamine synthetase inactivating factor IF17	Synechococcus sp. PCC 7002	Synechococcus sp. WH 8102	* Synechocystis sp. PCC 6803 Site: position = -96 score = 56.22 sequence = AATCGTTCATCTTCT... Gene: sll1515: Glutamine synthetase inactivating factor IF17	3 Thermosynechococcus elongatus BP-1* Gene: tlr0313: Glutamine synthetase inactivating factor IF17 Site: position = -97 score = 42.04 sequence = CAGCGTTGTTCCTTT... Gene: tll0165 (deprecated): Glutamine synthetase inactivating factor IF17 Site: position = -124 score = 49.82 sequence = AATCGTTCATCTTCG... Gene: tll1670 (deprecated): Glutamine synthetase inactivating factor IF17	* Trichodesmium erythraeum IMS101 Site: position = -86 score = 39.73 sequence = AAGCGTTCATCTTCT... Gene: Tery_3029: Glutamine synthetase inactivating factor IF17	Glutamine synthetase inactivating factor IF17

CRON 2.
cce_1045	* Cyanothece sp. ATCC 51142 Site: position = -95 score = 55.46 sequence = TCGTTCATCTGTTGT... Gene: cce_1045: hypothetical protein	Cyanothece sp. PCC 7425	* Cyanothece sp. PCC 8801 Site: position = -103 score = 47.16 sequence = AATCGTTCATCCGCC... Gene: PCC8801_4348: hypothetical protein	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Prochlorococcus marinus str. MIT 9313	Synechococcus elongatus PCC 7942	Synechococcus sp. JA-3-3Ab	Synechococcus sp. PCC 7002	Synechococcus sp. WH 8102	Synechocystis sp. PCC 6803	Thermosynechococcus elongatus BP-1	Trichodesmium erythraeum IMS101	hypothetical protein

CRON 3.
PMT1479	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 7425	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	* Prochlorococcus marinus str. MIT 9313 Site: position = -137 score = 35.24 sequence = ACGTTGAGCTAGGTC... Gene: PMT1479: possible Extracellular link domain	Synechococcus elongatus PCC 7942	Synechococcus sp. JA-3-3Ab	Synechococcus sp. PCC 7002	Synechococcus sp. WH 8102	Synechocystis sp. PCC 6803	Thermosynechococcus elongatus BP-1	Trichodesmium erythraeum IMS101	possible Extracellular link domain
PMT1480	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 7425	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Prochlorococcus marinus str. MIT 9313 Gene: PMT1480: hypothetical protein	Synechococcus elongatus PCC 7942	Synechococcus sp. JA-3-3Ab	Synechococcus sp. PCC 7002	Synechococcus sp. WH 8102	Synechocystis sp. PCC 6803	Thermosynechococcus elongatus BP-1	Trichodesmium erythraeum IMS101	hypothetical protein
glnK	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 7425	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421 Gene: gvip021: Nitrogen regulatory protein P-II	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Prochlorococcus marinus str. MIT 9313 Gene: PMT1481: Nitrogen regulatory protein P-II	Synechococcus elongatus PCC 7942	Synechococcus sp. JA-3-3Ab	Synechococcus sp. PCC 7002	Synechococcus sp. WH 8102 Gene: SYNW0462: Nitrogen regulatory protein P-II	Synechocystis sp. PCC 6803	Thermosynechococcus elongatus BP-1	Trichodesmium erythraeum IMS101	Nitrogen regulatory protein P-II

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog glnA - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --