Regulog AgaR2 - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	Galactosamine-6-phosphate; N-acetylgalactosamine-6-phosphate
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By trascription factor - AgaR
By TF family - DeoR
By effector - Galactosamine-6-phosphate
By effector - N-acetylgalactosamine-6-phosphate
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Serratia proteamaculans 568	9	2
Edwardsiella tarda EIB202	5	1
Photorhabdus luminescens subsp. laumondii TTO1	9	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes				Function

CRON 1.
agaR	2 Serratia proteamaculans 568* Site: position = -165 score = 7.29833 sequence = TTTTCA-(13)-CGAAAG Gene: Spro_3849: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family Site: position = -201 score = 8.23278 sequence = CTTTCG-(13)-CGAAAG Gene: Spro_2577: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	* Edwardsiella tarda EIB202 Site: position = -157 score = 8.23278 sequence = CTTTCG-(13)-CGAAAG Gene: ETAE_0677: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -176 score = 7.77337 sequence = CTTTCG-(13)-CGAAAC Gene: plu0832: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaZ	Serratia proteamaculans 568 Gene: Spro_3848: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Edwardsiella tarda EIB202	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0833: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaS	Serratia proteamaculans 568 Gene: Spro_2578: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Edwardsiella tarda EIB202 Gene: ETAE_0678: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0834: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaB-II	Serratia proteamaculans 568 Gene: Spro_3847: PTS system, predicted galactosamine-specific IIB component (EC 2.7.1.69)	Edwardsiella tarda EIB202 Gene: ETAE_0679: PTS system, predicted galactosamine-specific IIB component (EC 2.7.1.69)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0835: PTS system, predicted galactosamine-specific IIB component (EC 2.7.1.69)	PTS system, predicted galactosamine-specific IIB component (EC 2.7.1.69)
agaC-II	Serratia proteamaculans 568 Gene: Spro_3846: PTS system, predicted galactosamine-specific IIC component (EC 2.7.1.69)	Edwardsiella tarda EIB202 Gene: ETAE_0680: PTS system, predicted galactosamine-specific IIC component (EC 2.7.1.69)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0836: PTS system, predicted galactosamine-specific IIC component (EC 2.7.1.69)	PTS system, predicted galactosamine-specific IIC component (EC 2.7.1.69)
agaD-II	Serratia proteamaculans 568 Gene: Spro_3845: PTS system, predicted galactosamine-specific IID component (EC 2.7.1.69)	Edwardsiella tarda EIB202 Gene: ETAE_0681: PTS system, predicted galactosamine-specific IID component (EC 2.7.1.69)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0837: PTS system, predicted galactosamine-specific IID component (EC 2.7.1.69)	PTS system, predicted galactosamine-specific IID component (EC 2.7.1.69)
agaF-II	Serratia proteamaculans 568 Gene: Spro_3844: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	Edwardsiella tarda EIB202	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0838: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
agaY	Serratia proteamaculans 568 Gene: Spro_2579: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Edwardsiella tarda EIB202 Gene: ETAE_2526: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0839: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)
agaH	Serratia proteamaculans 568	Edwardsiella tarda EIB202	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0840: Predicted secreted ?-N-acetylgalactosaminidase (EC 3.2.1.49), GH36 family	Predicted secreted ?-N-acetylgalactosaminidase (EC 3.2.1.49), GH36 family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR2 - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --