Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Burkholderia

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 1 1
Burkholderia mallei ATCC 23344 1 1
Burkholderia sp. 383 2 2
Burkholderia cepacia AMMD 2 2
Burkholderia vietnamiensis G4 2 2
Burkholderia glumae BGR1 1 1
Burkholderia xenovorans LB400 2 2
Burkholderia phymatum STM815 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2119
*
Burkholderia pseudomallei K96243

Site:
position = -212
score = 35.56
sequence = CGCTCCTCATTGGGG...

Gene: BPSL2542: Probable transmembrane protein
*
Burkholderia mallei ATCC 23344

Site:
position = -212
score = 35.56
sequence = CGCTCCTCATTGGGG...

Gene: BMA0464: Probable transmembrane protein
*
Burkholderia sp. 383

Site:
position = -133
score = 45.53
sequence = TTCGCCGCTCATTGG...

Gene: Bcep18194_A4128: Probable transmembrane protein
*
Burkholderia cepacia AMMD

Site:
position = -137
score = 42.12
sequence = TCCGGCCCTCATTGG...

Gene: Bamb_0880: Probable transmembrane protein
*
Burkholderia vietnamiensis G4

Site:
position = -217
score = 43.63
sequence = TTCGCCGCTCATTGG...

Gene: Bcep1808_0937: Probable transmembrane protein
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -228
score = 25.25
sequence = CGTCCCTCATTGGGG...

Gene: Bxe_A0925: Probable transmembrane protein
*
Burkholderia phymatum STM815

Site:
position = -238
score = 34.92
sequence = TCCGCCGCTCATTGG...

Gene: Bphy_0688: Probable transmembrane protein
Probable transmembrane protein
 
CRON 2.
COG0530
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -248
score = 54.35
sequence = CCTTCGTCTTTGGGG...

Gene: Bcep18194_B2770: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
*
Burkholderia cepacia AMMD

Site:
position = -260
score = 56.21
sequence = GCCCTTCGTCTTTGG...

Gene: Bamb_5184: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
*
Burkholderia vietnamiensis G4

Site:
position = -267
score = 59.85
sequence = GCCGTTCGTCTTTGG...

Gene: Bcep1808_3943: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
*
Burkholderia glumae BGR1

Site:
position = -237
score = 51.07
sequence = AGCGCCTGTCCTAGG...

Gene: bglu_2g18590: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
*
Burkholderia xenovorans LB400

Site:
position = -274
score = 60.95
sequence = TCCCCCGGTCACTGG...

Gene: Bxe_A0089: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
 
Burkholderia phymatum STM815
Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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