Regulog yybP-ykoY - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 1 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia sp. 383 | 2 | 2 |
| Burkholderia cepacia AMMD | 2 | 2 |
| Burkholderia vietnamiensis G4 | 2 | 2 |
| Burkholderia glumae BGR1 | 1 | 1 |
| Burkholderia xenovorans LB400 | 2 | 2 |
| Burkholderia phymatum STM815 | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| COG2119 |
*
Burkholderia pseudomallei K96243 Site: position = -212 score = 35.56 sequence = CGCTCCTCATTGGGG... Gene: BPSL2542: Probable transmembrane protein |
*
Burkholderia mallei ATCC 23344 Site: position = -212 score = 35.56 sequence = CGCTCCTCATTGGGG... Gene: BMA0464: Probable transmembrane protein |
*
Burkholderia sp. 383 Site: position = -133 score = 45.53 sequence = TTCGCCGCTCATTGG... Gene: Bcep18194_A4128: Probable transmembrane protein |
*
Burkholderia cepacia AMMD Site: position = -137 score = 42.12 sequence = TCCGGCCCTCATTGG... Gene: Bamb_0880: Probable transmembrane protein |
*
Burkholderia vietnamiensis G4 Site: position = -217 score = 43.63 sequence = TTCGCCGCTCATTGG... Gene: Bcep1808_0937: Probable transmembrane protein |
|
*
Burkholderia xenovorans LB400 Site: position = -228 score = 25.25 sequence = CGTCCCTCATTGGGG... Gene: Bxe_A0925: Probable transmembrane protein |
*
Burkholderia phymatum STM815 Site: position = -238 score = 34.92 sequence = TCCGCCGCTCATTGG... Gene: Bphy_0688: Probable transmembrane protein |
Probable transmembrane protein |
| CRON 2. | |||||||||
| COG0530 |
|
|
*
Burkholderia sp. 383 Site: position = -248 score = 54.35 sequence = CCTTCGTCTTTGGGG... Gene: Bcep18194_B2770: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
*
Burkholderia cepacia AMMD Site: position = -260 score = 56.21 sequence = GCCCTTCGTCTTTGG... Gene: Bamb_5184: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
*
Burkholderia vietnamiensis G4 Site: position = -267 score = 59.85 sequence = GCCGTTCGTCTTTGG... Gene: Bcep1808_3943: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
*
Burkholderia glumae BGR1 Site: position = -237 score = 51.07 sequence = AGCGCCTGTCCTAGG... Gene: bglu_2g18590: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
*
Burkholderia xenovorans LB400 Site: position = -274 score = 60.95 sequence = TCCCCCGGTCACTGG... Gene: Bxe_A0089: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
|
Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |