Regulog ykkC-yxkD - Burkholderia

Properties
Regulator type:	RNA regulatory element
Name:	ykkC-yxkD
RFAM:	RF00442
Regulation mode:
Biological process:	Multidrug resistance
Effector:
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Burkholderia
By RNA motif - ykkC-yxkD
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4	7	2
Burkholderia glumae BGR1
Burkholderia xenovorans LB400	7	2
Burkholderia phymatum STM815	7	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
uctB	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	* Burkholderia vietnamiensis G4 Site: position = -262 score = 73.69 sequence = ATCTTAGGGTCGCTA... Gene: Bcep1808_5575: Urea carboxylase-related ABC transporter, periplasmic ligand binding protein	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -455 score = 66.6 sequence = CTTAGGGATGCTAGG... Gene: Bxe_B1377: Urea carboxylase-related ABC transporter, periplasmic ligand binding protein	* Burkholderia phymatum STM815 Site: position = -126 score = 77.27 sequence = AAATGGACGACTAGG... Gene: Bphy_3974: Urea carboxylase-related ABC transporter, periplasmic ligand binding protein	Urea carboxylase-related ABC transporter, periplasmic ligand binding protein
uctP	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4 Gene: Bcep1808_5580: Urea carboxylase-related ABC transporter, inner membrane subunit	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B1386: Urea carboxylase-related ABC transporter, inner membrane subunit	Burkholderia phymatum STM815 Gene: Bphy_3975: Urea carboxylase-related ABC transporter, inner membrane subunit	Urea carboxylase-related ABC transporter, inner membrane subunit
uctA	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4 Gene: Bcep1808_5581: Urea carboxylase-related ABC transporter, ATPase protein	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B1387: Urea carboxylase-related ABC transporter, ATPase protein	Burkholderia phymatum STM815 Gene: Bphy_3976: Urea carboxylase-related ABC transporter, ATPase protein	Urea carboxylase-related ABC transporter, ATPase protein
amt1	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	* Burkholderia vietnamiensis G4 Site: position = -192 score = 69.73 sequence = TTCAGGATCGCTAGG... Gene: Bcep1808_5576: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -191 score = 68.96 sequence = TCTTCAGGATCGCTA... Gene: Bxe_B1382: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Burkholderia phymatum STM815 Gene: Bphy_3977: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4 Gene: Bcep1808_5577: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B1383: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Burkholderia phymatum STM815 Gene: Bphy_3978: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4 Gene: Bcep1808_5578: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B1384: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Burkholderia phymatum STM815 Gene: Bphy_3979: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
ucaB	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4 Gene: Bcep1808_5579: Allophanate hydrolase (EC 3.5.1.54)	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B1385: Allophanate hydrolase (EC 3.5.1.54)	Burkholderia phymatum STM815 Gene: Bphy_3980: Allophanate hydrolase (EC 3.5.1.54)	Allophanate hydrolase (EC 3.5.1.54)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ykkC-yxkD - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --