Regulog ykkC-yxkD - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia sp. 383 | ||
| Burkholderia cepacia AMMD | ||
| Burkholderia vietnamiensis G4 | 7 | 2 |
| Burkholderia glumae BGR1 | ||
| Burkholderia xenovorans LB400 | 7 | 2 |
| Burkholderia phymatum STM815 | 7 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| uctB |
|
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*
Burkholderia vietnamiensis G4 Site: position = -262 score = 73.69 sequence = ATCTTAGGGTCGCTA... Gene: Bcep1808_5575: Urea carboxylase-related ABC transporter, periplasmic ligand binding protein |
|
*
Burkholderia xenovorans LB400 Site: position = -455 score = 66.6 sequence = CTTAGGGATGCTAGG... Gene: Bxe_B1377: Urea carboxylase-related ABC transporter, periplasmic ligand binding protein |
*
Burkholderia phymatum STM815 Site: position = -126 score = 77.27 sequence = AAATGGACGACTAGG... Gene: Bphy_3974: Urea carboxylase-related ABC transporter, periplasmic ligand binding protein |
Urea carboxylase-related ABC transporter, periplasmic ligand binding protein |
| uctP |
|
|
|
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Gene: Bcep1808_5580: Urea carboxylase-related ABC transporter, inner membrane subunit |
|
Gene: Bxe_B1386: Urea carboxylase-related ABC transporter, inner membrane subunit |
Gene: Bphy_3975: Urea carboxylase-related ABC transporter, inner membrane subunit |
Urea carboxylase-related ABC transporter, inner membrane subunit |
| uctA |
|
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|
|
Gene: Bcep1808_5581: Urea carboxylase-related ABC transporter, ATPase protein |
|
Gene: Bxe_B1387: Urea carboxylase-related ABC transporter, ATPase protein |
Gene: Bphy_3976: Urea carboxylase-related ABC transporter, ATPase protein |
Urea carboxylase-related ABC transporter, ATPase protein |
| amt1 |
|
|
|
|
*
Burkholderia vietnamiensis G4 Site: position = -192 score = 69.73 sequence = TTCAGGATCGCTAGG... Gene: Bcep1808_5576: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
*
Burkholderia xenovorans LB400 Site: position = -191 score = 68.96 sequence = TCTTCAGGATCGCTA... Gene: Bxe_B1382: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Bphy_3977: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| amt2 |
|
|
|
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Gene: Bcep1808_5577: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
Gene: Bxe_B1383: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Bphy_3978: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| ucaA |
|
|
|
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Gene: Bcep1808_5578: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
|
Gene: Bxe_B1384: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Gene: Bphy_3979: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
| ucaB |
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Gene: Bcep1808_5579: Allophanate hydrolase (EC 3.5.1.54) |
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Gene: Bxe_B1385: Allophanate hydrolase (EC 3.5.1.54) |
Gene: Bphy_3980: Allophanate hydrolase (EC 3.5.1.54) |
Allophanate hydrolase (EC 3.5.1.54) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |