Regulog PreQ1 - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | PreQ1 |
| RFAM: | RF00522 |
| Regulation mode: | |
| Biological process: | Queuosine biosynthesis |
| Effector: | Pre-queuosine1 |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - PreQ1
- By effector - Pre-queuosine1
- By pathway - Queuosine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | ||
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | 4 | 1 |
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| queC |
Gene: RSP_3642: Queuosine Biosynthesis QueC ATPase |
Gene: Pden_4185: Queuosine Biosynthesis QueC ATPase |
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2
Roseovarius nubinhibens ISM Gene: ISM_08280: Queuosine Biosynthesis QueC ATPase Gene: ISM_13440: Queuosine Biosynthesis QueC ATPase |
*
Roseovarius sp. 217 Site: position = -45 score = 25.76 sequence = GTCGAGCGGTCGCAG... Gene: ROS217_16351: Queuosine Biosynthesis QueC ATPase |
Gene: EE36_15747: Queuosine Biosynthesis QueC ATPase |
Gene: TM1040_2047: Queuosine Biosynthesis QueC ATPase |
Gene: SPO3751: Queuosine Biosynthesis QueC ATPase |
Gene: MED193_18409: Queuosine Biosynthesis QueC ATPase |
Gene: HNE_0531: Queuosine Biosynthesis QueC ATPase |
Gene: OA2633_06389: Queuosine Biosynthesis QueC ATPase |
Queuosine Biosynthesis QueC ATPase |
| queD |
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Gene: Pden_4184: Queuosine biosynthesis QueD, PTPS-I |
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Gene: ISM_13435: Queuosine biosynthesis QueD, PTPS-I |
Gene: ROS217_16356: Queuosine biosynthesis QueD, PTPS-I |
Gene: EE36_15752: Queuosine biosynthesis QueD, PTPS-I |
Gene: TM1040_2046: Queuosine biosynthesis QueD, PTPS-I |
Gene: SPO3903: Queuosine biosynthesis QueD, PTPS-I |
Gene: MED193_18414: Queuosine biosynthesis QueD, PTPS-I |
Gene: HNE_0533: Queuosine biosynthesis QueD, PTPS-I |
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Queuosine biosynthesis QueD, PTPS-I |
| queE |
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Gene: Pden_4183: Queuosine Biosynthesis QueE Radical SAM |
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Gene: ISM_13430: Queuosine Biosynthesis QueE Radical SAM |
Gene: ROS217_16361: Queuosine Biosynthesis QueE Radical SAM |
Gene: EE36_15757: Queuosine Biosynthesis QueE Radical SAM |
Gene: TM1040_2045: Queuosine Biosynthesis QueE Radical SAM |
Gene: SPO3752: Queuosine Biosynthesis QueE Radical SAM |
Gene: MED193_18419: Queuosine Biosynthesis QueE Radical SAM |
Gene: HNE_0532: Queuosine Biosynthesis QueE Radical SAM |
Gene: OA2633_06384: Queuosine Biosynthesis QueE Radical SAM |
Queuosine Biosynthesis QueE Radical SAM |
| queF |
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Gene: Pden_4182: NADPH dependent preQ0 reductase |
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Gene: ISM_13425: NADPH dependent preQ0 reductase |
Gene: ROS217_16366: NADPH dependent preQ0 reductase |
Gene: EE36_15762: NADPH dependent preQ0 reductase |
Gene: TM1040_2044: NADPH dependent preQ0 reductase |
Gene: SPO3753: NADPH dependent preQ0 reductase |
Gene: MED193_16989: NADPH dependent preQ0 reductase |
Gene: HNE_1855: NADPH dependent preQ0 reductase |
Gene: OA2633_04411: NADPH dependent preQ0 reductase |
NADPH dependent preQ0 reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |