Regulog PreQ1 - Rhodobacterales

Properties
Regulator type:	RNA regulatory element
Name:	PreQ1
RFAM:	RF00522
Regulation mode:
Biological process:	Queuosine biosynthesis
Effector:	Pre-queuosine1
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Rhodobacterales
By RNA motif - PreQ1
By effector - Pre-queuosine1
By pathway - Queuosine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM
Roseovarius sp. 217	4	1
Sulfitobacter sp. EE-36
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
queC	Rhodobacter sphaeroides 2.4.1 Gene: RSP_3642: Queuosine Biosynthesis QueC ATPase	Paracoccus denitrificans PD1222 Gene: Pden_4185: Queuosine Biosynthesis QueC ATPase	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	2 Roseovarius nubinhibens ISM Gene: ISM_08280: Queuosine Biosynthesis QueC ATPase Gene: ISM_13440: Queuosine Biosynthesis QueC ATPase	* Roseovarius sp. 217 Site: position = -45 score = 25.76 sequence = GTCGAGCGGTCGCAG... Gene: ROS217_16351: Queuosine Biosynthesis QueC ATPase	Sulfitobacter sp. EE-36 Gene: EE36_15747: Queuosine Biosynthesis QueC ATPase	Silicibacter TM1040 Gene: TM1040_2047: Queuosine Biosynthesis QueC ATPase	Silicibacter pomeroyi DSS-3 Gene: SPO3751: Queuosine Biosynthesis QueC ATPase	Roseobacter sp. MED193 Gene: MED193_18409: Queuosine Biosynthesis QueC ATPase	Hyphomonas neptunium ATCC 15444 Gene: HNE_0531: Queuosine Biosynthesis QueC ATPase	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06389: Queuosine Biosynthesis QueC ATPase	Queuosine Biosynthesis QueC ATPase
queD	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4184: Queuosine biosynthesis QueD, PTPS-I	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_13435: Queuosine biosynthesis QueD, PTPS-I	Roseovarius sp. 217 Gene: ROS217_16356: Queuosine biosynthesis QueD, PTPS-I	Sulfitobacter sp. EE-36 Gene: EE36_15752: Queuosine biosynthesis QueD, PTPS-I	Silicibacter TM1040 Gene: TM1040_2046: Queuosine biosynthesis QueD, PTPS-I	Silicibacter pomeroyi DSS-3 Gene: SPO3903: Queuosine biosynthesis QueD, PTPS-I	Roseobacter sp. MED193 Gene: MED193_18414: Queuosine biosynthesis QueD, PTPS-I	Hyphomonas neptunium ATCC 15444 Gene: HNE_0533: Queuosine biosynthesis QueD, PTPS-I	Oceanicaulis alexandrii HTCC2633	Queuosine biosynthesis QueD, PTPS-I
queE	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4183: Queuosine Biosynthesis QueE Radical SAM	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_13430: Queuosine Biosynthesis QueE Radical SAM	Roseovarius sp. 217 Gene: ROS217_16361: Queuosine Biosynthesis QueE Radical SAM	Sulfitobacter sp. EE-36 Gene: EE36_15757: Queuosine Biosynthesis QueE Radical SAM	Silicibacter TM1040 Gene: TM1040_2045: Queuosine Biosynthesis QueE Radical SAM	Silicibacter pomeroyi DSS-3 Gene: SPO3752: Queuosine Biosynthesis QueE Radical SAM	Roseobacter sp. MED193 Gene: MED193_18419: Queuosine Biosynthesis QueE Radical SAM	Hyphomonas neptunium ATCC 15444 Gene: HNE_0532: Queuosine Biosynthesis QueE Radical SAM	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06384: Queuosine Biosynthesis QueE Radical SAM	Queuosine Biosynthesis QueE Radical SAM
queF	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4182: NADPH dependent preQ0 reductase	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_13425: NADPH dependent preQ0 reductase	Roseovarius sp. 217 Gene: ROS217_16366: NADPH dependent preQ0 reductase	Sulfitobacter sp. EE-36 Gene: EE36_15762: NADPH dependent preQ0 reductase	Silicibacter TM1040 Gene: TM1040_2044: NADPH dependent preQ0 reductase	Silicibacter pomeroyi DSS-3 Gene: SPO3753: NADPH dependent preQ0 reductase	Roseobacter sp. MED193 Gene: MED193_16989: NADPH dependent preQ0 reductase	Hyphomonas neptunium ATCC 15444 Gene: HNE_1855: NADPH dependent preQ0 reductase	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_04411: NADPH dependent preQ0 reductase	NADPH dependent preQ0 reductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PreQ1 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --