Regulog ykkC-yxkD - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 1 | 1 |
| Paracoccus denitrificans PD1222 | 1 | 1 |
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | 6 | 1 |
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| PF00892 |
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Rhodobacter sphaeroides 2.4.1 Site: position = -151 score = 39.71 sequence = ACTGAGTGGCAACTA... Gene: RSP_1649: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Paracoccus denitrificans PD1222 Site: position = -148 score = 39.79 sequence = TGAGTGGTGACTAGG... Gene: Pden_1761: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Gene: OG2516_12426: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Permeases of the drug/metabolite transporter (DMT) superfamily |
| CRON 2. | ||||||||||||||||
| uctB |
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Rhodobacterales bacterium HTCC2654 Site: position = -205 score = 76.48 sequence = CGTGCAGGACGCTTA... Gene: RB2654_08657: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
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Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
| uctP |
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Gene: RB2654_08652: Urea carboxylase-related ABC transporter, permease protein |
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Urea carboxylase-related ABC transporter, permease protein |
| uctA |
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Gene: RB2654_08647: Urea carboxylase-related ABC transporter, ATPase protein |
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Urea carboxylase-related ABC transporter, ATPase protein |
| speB |
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Gene: RB2654_08642: Agmatinase (EC 3.5.3.11) |
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Agmatinase (EC 3.5.3.11) |
| RB2654_08637 |
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Gene: RB2654_08637: hypothetical protein |
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hypothetical protein |
| RB2654_08632 |
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Gene: RB2654_08632: Glycine/serine hydroxymethyltransferase |
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Glycine/serine hydroxymethyltransferase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |