Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog serC - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: serC
RFAM: RF00517
Regulation mode:
Biological process: Serine biosynthesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 2 1
Paracoccus denitrificans PD1222 2 1
Jannaschia sp. CCS1 2 1
Rhodobacterales bacterium HTCC2654 2 1
Oceanicola granulosus HTCC2516 2 1
Loktanella vestfoldensis SKA53 2 1
Oceanicola batsensis HTCC2597 2 1
Roseovarius nubinhibens ISM 2 1
Roseovarius sp. 217 2 1
Sulfitobacter sp. EE-36 2 1
Silicibacter TM1040 2 1
Silicibacter pomeroyi DSS-3 2 1
Roseobacter sp. MED193 2 1
Hyphomonas neptunium ATCC 15444 1 1
Oceanicaulis alexandrii HTCC2633
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
serC
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -47
score = 67.4
sequence = AGCGGGACACCTCTC...

Gene: RSP_1351: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Paracoccus denitrificans PD1222

Site:
position = -50
score = 59.49
sequence = AGCGGGACACGCCGC...

Gene: Pden_0813: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Jannaschia sp. CCS1

Site:
position = -50
score = 66.69
sequence = GGTGGGACACCCTTC...

Gene: Jann_0260: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Rhodobacterales bacterium HTCC2654

Site:
position = 7
score = 63.73
sequence = GGCGGGACACTCCGC...

Gene: RB2654_11979: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Oceanicola granulosus HTCC2516

Site:
position = -53
score = 66.68
sequence = GCGGCGGGACACCTC...

Gene: OG2516_09740: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Loktanella vestfoldensis SKA53

Site:
position = -51
score = 68.06
sequence = GGTGGGACACCCTTC...

Gene: SKA53_10289: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Oceanicola batsensis HTCC2597

Site:
position = -53
score = 63.01
sequence = GCGGCGGGACACCCC...

Gene: OB2597_14536: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Roseovarius nubinhibens ISM

Site:
position = -53
score = 67.87
sequence = TCCGCGGGACACCCT...

Gene: ISM_10531: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Roseovarius sp. 217

Site:
position = -139
score = 68.33
sequence = TCAGTGGGACACCCC...

Gene: ROS217_08825: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Sulfitobacter sp. EE-36

Site:
position = -50
score = 65.25
sequence = CGTGGGACACCCTTC...

Gene: EE36_05463: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Silicibacter TM1040

Site:
position = -51
score = 71.2
sequence = GGTGGGACACCCCTC...

Gene: TM1040_3020: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Silicibacter pomeroyi DSS-3

Site:
position = -51
score = 70.68
sequence = GGCGGGACACCCCTC...

Gene: SPO3354: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Roseobacter sp. MED193

Site:
position = -53
score = 66.72
sequence = GCGGCGGGACACCCT...

Gene: MED193_13323: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Hyphomonas neptunium ATCC 15444

Site:
position = -61
score = 45.79
sequence = GCGGCGGGCCAGGCG...

Gene: HNE_3128: Phosphoserine aminotransferase (EC 2.6.1.52)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_07279: Phosphoserine aminotransferase (EC 2.6.1.52)
Phosphoserine aminotransferase (EC 2.6.1.52)
serA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1352: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Paracoccus denitrificans PD1222

Gene: Pden_0814: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Jannaschia sp. CCS1

Gene: Jann_0261: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11984: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_09730: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10294: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14531: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Roseovarius nubinhibens ISM

Gene: ISM_10526: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Roseovarius sp. 217

Gene: ROS217_08815: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Sulfitobacter sp. EE-36

Gene: EE36_05468: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Silicibacter TM1040

Gene: TM1040_3021: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Silicibacter pomeroyi DSS-3

Gene: SPO3355: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Roseobacter sp. MED193

Gene: MED193_13318: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3126: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Oceanicaulis alexandrii HTCC2633
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD