Regulog serC - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | serC |
| RFAM: | RF00517 |
| Regulation mode: | |
| Biological process: | Serine biosynthesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - serC
- By pathway - Serine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 2 | 1 |
| Paracoccus denitrificans PD1222 | 2 | 1 |
| Jannaschia sp. CCS1 | 2 | 1 |
| Rhodobacterales bacterium HTCC2654 | 2 | 1 |
| Oceanicola granulosus HTCC2516 | 2 | 1 |
| Loktanella vestfoldensis SKA53 | 2 | 1 |
| Oceanicola batsensis HTCC2597 | 2 | 1 |
| Roseovarius nubinhibens ISM | 2 | 1 |
| Roseovarius sp. 217 | 2 | 1 |
| Sulfitobacter sp. EE-36 | 2 | 1 |
| Silicibacter TM1040 | 2 | 1 |
| Silicibacter pomeroyi DSS-3 | 2 | 1 |
| Roseobacter sp. MED193 | 2 | 1 |
| Hyphomonas neptunium ATCC 15444 | 1 | 1 |
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| serC |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -47 score = 67.4 sequence = AGCGGGACACCTCTC... Gene: RSP_1351: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Paracoccus denitrificans PD1222 Site: position = -50 score = 59.49 sequence = AGCGGGACACGCCGC... Gene: Pden_0813: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Jannaschia sp. CCS1 Site: position = -50 score = 66.69 sequence = GGTGGGACACCCTTC... Gene: Jann_0260: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Rhodobacterales bacterium HTCC2654 Site: position = 7 score = 63.73 sequence = GGCGGGACACTCCGC... Gene: RB2654_11979: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Oceanicola granulosus HTCC2516 Site: position = -53 score = 66.68 sequence = GCGGCGGGACACCTC... Gene: OG2516_09740: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Loktanella vestfoldensis SKA53 Site: position = -51 score = 68.06 sequence = GGTGGGACACCCTTC... Gene: SKA53_10289: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Oceanicola batsensis HTCC2597 Site: position = -53 score = 63.01 sequence = GCGGCGGGACACCCC... Gene: OB2597_14536: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Roseovarius nubinhibens ISM Site: position = -53 score = 67.87 sequence = TCCGCGGGACACCCT... Gene: ISM_10531: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Roseovarius sp. 217 Site: position = -139 score = 68.33 sequence = TCAGTGGGACACCCC... Gene: ROS217_08825: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Sulfitobacter sp. EE-36 Site: position = -50 score = 65.25 sequence = CGTGGGACACCCTTC... Gene: EE36_05463: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Silicibacter TM1040 Site: position = -51 score = 71.2 sequence = GGTGGGACACCCCTC... Gene: TM1040_3020: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Silicibacter pomeroyi DSS-3 Site: position = -51 score = 70.68 sequence = GGCGGGACACCCCTC... Gene: SPO3354: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Roseobacter sp. MED193 Site: position = -53 score = 66.72 sequence = GCGGCGGGACACCCT... Gene: MED193_13323: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Hyphomonas neptunium ATCC 15444 Site: position = -61 score = 45.79 sequence = GCGGCGGGCCAGGCG... Gene: HNE_3128: Phosphoserine aminotransferase (EC 2.6.1.52) |
Gene: OA2633_07279: Phosphoserine aminotransferase (EC 2.6.1.52) |
Phosphoserine aminotransferase (EC 2.6.1.52) |
| serA |
Gene: RSP_1352: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Pden_0814: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Jann_0261: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: RB2654_11984: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: OG2516_09730: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: SKA53_10294: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: OB2597_14531: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: ISM_10526: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: ROS217_08815: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: EE36_05468: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: TM1040_3021: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: SPO3355: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: MED193_13318: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: HNE_3126: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
|
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |