Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog S15 - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: S15
RFAM: RF00114
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 1 1
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1 1 1
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53 1 1
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM 1 1
Roseovarius sp. 217 1 1
Sulfitobacter sp. EE-36 1 1
Silicibacter TM1040 1 1
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193 1 1
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpsO
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -56
score = 20.94
sequence = GGCCTTGCTGGACGA...

Gene: RSP_1111: SSU ribosomal protein S15p (S13e)
 
Paracoccus denitrificans PD1222

Gene: Pden_2760: SSU ribosomal protein S15p (S13e)
*
Jannaschia sp. CCS1

Site:
position = -60
score = 14.14
sequence = TGGGCCTTGCTGGAC...

Gene: Jann_4030: SSU ribosomal protein S15p (S13e)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12279: SSU ribosomal protein S15p (S13e)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10206: SSU ribosomal protein S15p (S13e)
*
Loktanella vestfoldensis SKA53

Site:
position = -60
score = 21.5
sequence = CGGGCCTTGCTGGAC...

Gene: SKA53_12563: SSU ribosomal protein S15p (S13e)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_11171: SSU ribosomal protein S15p (S13e)
*
Roseovarius nubinhibens ISM

Site:
position = -63
score = 18.16
sequence = AGGACCCTGCTGGAC...

Gene: ISM_06390: SSU ribosomal protein S15p (S13e)
*
Roseovarius sp. 217

Site:
position = -58
score = 20.39
sequence = GACCTTGCTGGACGA...

Gene: ROS217_09385: SSU ribosomal protein S15p (S13e)
*
Sulfitobacter sp. EE-36

Site:
position = -62
score = 19.96
sequence = GCCTGTGCTGGACGA...

Gene: EE36_05853: SSU ribosomal protein S15p (S13e)
*
Silicibacter TM1040

Site:
position = -63
score = 15.27
sequence = GGGCCTGCGCTGGAC...

Gene: TM1040_0081: SSU ribosomal protein S15p (S13e)
 
Silicibacter pomeroyi DSS-3

Gene: SPO3840: SSU ribosomal protein S15p (S13e)
*
Roseobacter sp. MED193

Site:
position = -60
score = 21.64
sequence = GCCTGCGCTGGACGA...

Gene: MED193_13063: SSU ribosomal protein S15p (S13e)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3442: SSU ribosomal protein S15p (S13e)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -75
score = 16.92
sequence = GCGATCGGCGAAGCA...

Gene: OA2633_10304: SSU ribosomal protein S15p (S13e)
SSU ribosomal protein S15p (S13e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD