Regulog S15 - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 1 | 1 |
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | 1 | 1 |
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | 1 | 1 |
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | 1 | 1 |
| Roseovarius sp. 217 | 1 | 1 |
| Sulfitobacter sp. EE-36 | 1 | 1 |
| Silicibacter TM1040 | 1 | 1 |
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | 1 | 1 |
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rpsO |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -56 score = 20.94 sequence = GGCCTTGCTGGACGA... Gene: RSP_1111: SSU ribosomal protein S15p (S13e) |
Gene: Pden_2760: SSU ribosomal protein S15p (S13e) |
*
Jannaschia sp. CCS1 Site: position = -60 score = 14.14 sequence = TGGGCCTTGCTGGAC... Gene: Jann_4030: SSU ribosomal protein S15p (S13e) |
Gene: RB2654_12279: SSU ribosomal protein S15p (S13e) |
Gene: OG2516_10206: SSU ribosomal protein S15p (S13e) |
*
Loktanella vestfoldensis SKA53 Site: position = -60 score = 21.5 sequence = CGGGCCTTGCTGGAC... Gene: SKA53_12563: SSU ribosomal protein S15p (S13e) |
Gene: OB2597_11171: SSU ribosomal protein S15p (S13e) |
*
Roseovarius nubinhibens ISM Site: position = -63 score = 18.16 sequence = AGGACCCTGCTGGAC... Gene: ISM_06390: SSU ribosomal protein S15p (S13e) |
*
Roseovarius sp. 217 Site: position = -58 score = 20.39 sequence = GACCTTGCTGGACGA... Gene: ROS217_09385: SSU ribosomal protein S15p (S13e) |
*
Sulfitobacter sp. EE-36 Site: position = -62 score = 19.96 sequence = GCCTGTGCTGGACGA... Gene: EE36_05853: SSU ribosomal protein S15p (S13e) |
*
Silicibacter TM1040 Site: position = -63 score = 15.27 sequence = GGGCCTGCGCTGGAC... Gene: TM1040_0081: SSU ribosomal protein S15p (S13e) |
Gene: SPO3840: SSU ribosomal protein S15p (S13e) |
*
Roseobacter sp. MED193 Site: position = -60 score = 21.64 sequence = GCCTGCGCTGGACGA... Gene: MED193_13063: SSU ribosomal protein S15p (S13e) |
Gene: HNE_3442: SSU ribosomal protein S15p (S13e) |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -75 score = 16.92 sequence = GCGATCGGCGAAGCA... Gene: OA2633_10304: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |