Regulog S15 - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 1 | 1 |
| Pseudomonas entomophila L48 | 1 | 1 |
| Pseudomonas putida KT2440 | 1 | 1 |
| Pseudomonas syringae pv. tomato str. DC3000 | 1 | 1 |
| Pseudomonas fluorescens Pf-5 | 1 | 1 |
| Pseudomonas mendocina ymp | 1 | 1 |
| Pseudomonas stutzeri A1501 | 1 | 1 |
| Azotobacter vinelandii AvOP | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| rpsO |
*
Pseudomonas aeruginosa PAO1 Site: position = -65 score = 50.4 sequence = CGGTCATTCCTCCTT... Gene: PA4741: SSU ribosomal protein S15p (S13e) |
*
Pseudomonas entomophila L48 Site: position = -40 score = 50.41 sequence = TGGACCCCGCTTGCG... Gene: PSEEN0798: SSU ribosomal protein S15p (S13e) |
*
Pseudomonas putida KT2440 Site: position = -41 score = 53.56 sequence = ATTGGACCCCGCATG... Gene: PP_4709: SSU ribosomal protein S15p (S13e) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -53 score = 45.21 sequence = GCCTGTTGGAAACGT... Gene: PSPTO4487: SSU ribosomal protein S15p (S13e) |
*
Pseudomonas fluorescens Pf-5 Site: position = -45 score = 50.77 sequence = GTTGAAACTGTTCTT... Gene: PFL_0847: SSU ribosomal protein S15p (S13e) |
*
Pseudomonas mendocina ymp Site: position = -41 score = 50.63 sequence = TTGAGACTGCTGCGG... Gene: Pmen_3605: SSU ribosomal protein S15p (S13e) |
*
Pseudomonas stutzeri A1501 Site: position = -61 score = 52.66 sequence = GTCATGCCTCTTTAT... Gene: PST_3307: SSU ribosomal protein S15p (S13e) |
*
Azotobacter vinelandii AvOP Site: position = -68 score = 42.0 sequence = CCCGGCCTGCTGAAG... Gene: Avin_42790: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |