Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog S15 - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: S15
RFAM: RF00114
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 1 1
Pseudomonas entomophila L48 1 1
Pseudomonas putida KT2440 1 1
Pseudomonas syringae pv. tomato str. DC3000 1 1
Pseudomonas fluorescens Pf-5 1 1
Pseudomonas mendocina ymp 1 1
Pseudomonas stutzeri A1501 1 1
Azotobacter vinelandii AvOP 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpsO
*
Pseudomonas aeruginosa PAO1

Site:
position = -65
score = 50.4
sequence = CGGTCATTCCTCCTT...

Gene: PA4741: SSU ribosomal protein S15p (S13e)
*
Pseudomonas entomophila L48

Site:
position = -40
score = 50.41
sequence = TGGACCCCGCTTGCG...

Gene: PSEEN0798: SSU ribosomal protein S15p (S13e)
*
Pseudomonas putida KT2440

Site:
position = -41
score = 53.56
sequence = ATTGGACCCCGCATG...

Gene: PP_4709: SSU ribosomal protein S15p (S13e)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -53
score = 45.21
sequence = GCCTGTTGGAAACGT...

Gene: PSPTO4487: SSU ribosomal protein S15p (S13e)
*
Pseudomonas fluorescens Pf-5

Site:
position = -45
score = 50.77
sequence = GTTGAAACTGTTCTT...

Gene: PFL_0847: SSU ribosomal protein S15p (S13e)
*
Pseudomonas mendocina ymp

Site:
position = -41
score = 50.63
sequence = TTGAGACTGCTGCGG...

Gene: Pmen_3605: SSU ribosomal protein S15p (S13e)
*
Pseudomonas stutzeri A1501

Site:
position = -61
score = 52.66
sequence = GTCATGCCTCTTTAT...

Gene: PST_3307: SSU ribosomal protein S15p (S13e)
*
Azotobacter vinelandii AvOP

Site:
position = -68
score = 42.0
sequence = CCCGGCCTGCTGAAG...

Gene: Avin_42790: SSU ribosomal protein S15p (S13e)
SSU ribosomal protein S15p (S13e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD