Regulog yybP-ykoY - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 2 | 2 |
| Pseudomonas entomophila L48 | 1 | 1 |
| Pseudomonas putida KT2440 | 1 | 1 |
| Pseudomonas syringae pv. tomato str. DC3000 | 2 | 2 |
| Pseudomonas fluorescens Pf-5 | 2 | 2 |
| Pseudomonas mendocina ymp | 1 | 1 |
| Pseudomonas stutzeri A1501 | 1 | 1 |
| Azotobacter vinelandii AvOP | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| COG1971 |
*
Pseudomonas aeruginosa PAO1 Site: position = -176 score = 58.79 sequence = GCCGGCCTTCCTTGG... Gene: PA2910: Integral membrane protein |
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|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -176 score = 55.93 sequence = CGGCCCTTGTTGGGG... Gene: PSPTO3755: Integral membrane protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -175 score = 53.72 sequence = CGCGCCTCTTTGGGG... Gene: PFL_2642: Integral membrane protein |
|
|
|
Integral membrane protein |
| CRON 2. | |||||||||
| COG2119 |
*
Pseudomonas aeruginosa PAO1 Site: position = -213 score = 23.96 sequence = GCCCCGTCCTAGGGG... Gene: PA4629: Probable transmembrane protein |
*
Pseudomonas entomophila L48 Site: position = -208 score = 36.11 sequence = CCGCTCCGTCCTAGG... Gene: PSEEN0905: Probable transmembrane protein |
*
Pseudomonas putida KT2440 Site: position = -229 score = 41.85 sequence = CCGCACCGTCCTAGG... Gene: PP0760: Probable transmembrane protein |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -208 score = 43.64 sequence = CCGCTCCGTCCTAGG... Gene: PSPTO1145: Probable transmembrane protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -210 score = 44.76 sequence = GCTCCGTCCTAGGGG... Gene: PFL_5123: Probable transmembrane protein |
*
Pseudomonas mendocina ymp Site: position = -207 score = 36.47 sequence = CGCCCGTCCTAGGGG... Gene: Pmen_3666: Probable transmembrane protein |
*
Pseudomonas stutzeri A1501 Site: position = -215 score = 43.58 sequence = GCCGCCGTCCTTGGG... Gene: PST_1115: Probable transmembrane protein |
*
Azotobacter vinelandii AvOP Site: position = -205 score = 30.88 sequence = GCGCCGTCCTGGGGG... Gene: Avin_41250: Probable transmembrane protein |
Probable transmembrane protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |