Regulog ykoK - Mycobacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | ykoK |
| RFAM: | RF00380 |
| Regulation mode: | |
| Biological process: | Magnesium homeostasis |
| Effector: | Magnesium ion, (Mg2+) |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By RNA motif - ykoK
- By effector - Magnesium ion, (Mg2+)
- By pathway - Magnesium homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium tuberculosis H37Rv | 3 | 2 |
| Mycobacterium leprae TN | ||
| Mycobacterium marinum M | 3 | 2 |
| Mycobacterium avium 104 | 6 | 3 |
| Mycobacterium sp. JLS | ||
| Mycobacterium vanbaalenii PYR-1 | ||
| Mycobacterium flavescens PYR-GCK | ||
| Mycobacterium smegmatis str. MC2 155 | 1 | 1 |
| Mycobacterium abscessus ATCC 19977 | 1 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| MMAR_0314 |
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*
Mycobacterium marinum M Site: position = -468 score = 134.35 sequence = AAGCACCTCGGTAGG... Gene: MMAR_0314: Hypothetical protein |
*
Mycobacterium avium 104 Site: position = -463 score = 127.04 sequence = GCAAGCACCTCGGTA... Gene: MAV_5198: Hypothetical protein |
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Hypothetical protein |
| COG1914 |
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Gene: ML2667: Divalent cation-transport integral membrane protein |
Gene: MMAR_0315: Divalent cation-transport integral membrane protein |
Gene: MAV_5197: Divalent cation-transport integral membrane protein |
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*
Mycobacterium abscessus ATCC 19977 Site: position = -536 score = 137.04 sequence = GTCAGCACCTCGCTA... Gene: MAB_4716c: Divalent cation-transport integral membrane protein |
Divalent cation-transport integral membrane protein |
| CRON 2. | ||||||||||
| Rv1535 |
*
Mycobacterium tuberculosis H37Rv Site: position = -466 score = 141.43 sequence = AAGCACCTCGTTAGG... Gene: Rv1535: Hypothetical protein |
|
*
Mycobacterium marinum M Site: position = -454 score = 140.34 sequence = AAGCACCTCGTTAGG... Gene: MMAR_2348: Hypothetical protein |
*
Mycobacterium avium 104 Site: position = -479 score = 132.43 sequence = GTAAGCACCTCGTTA... Gene: MAV_3236: Hypothetical protein |
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Hypothetical protein |
| CRON 3. | ||||||||||
| MSMEG_5646 |
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*
Mycobacterium smegmatis str. MC2 155 Site: position = -404 score = 129.98 sequence = CCGCGCTTCGTTAGG... Gene: MSMEG_5646: hypothetical protein |
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hypothetical protein |
| CRON 4. | ||||||||||
| PE20 |
*
Mycobacterium tuberculosis H37Rv Site: position = -476 score = 131.69 sequence = AAGCACCTCGCTAGG... Gene: Rv1806: PE-PGRS family protein |
|
Gene: MMAR_4786: PE-PGRS family protein |
*
Mycobacterium avium 104 Site: position = -459 score = 131.87 sequence = GCAAGCACCTCGCTA... Gene: MAV_2915: PE-PGRS family protein |
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PE-PGRS family protein |
| ppe |
Gene: Rv1807: PPE family protein |
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2
Mycobacterium avium 104 Gene: MAV_2914: PPE family protein Gene: MAV_2913: PPE family protein |
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PPE family protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |