Regulog ydaO-yuaA - Mycobacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | ydaO-yuaA |
| RFAM: | RF00379 |
| Regulation mode: | |
| Biological process: | Osmotic stress response; Cell wall metabolism |
| Effector: | |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By RNA motif - ydaO-yuaA
- By pathway - Osmotic stress response
- By pathway - Cell wall metabolism
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium tuberculosis H37Rv | 1 | 1 |
| Mycobacterium leprae TN | 1 | 1 |
| Mycobacterium marinum M | 1 | 1 |
| Mycobacterium avium 104 | 1 | 1 |
| Mycobacterium sp. JLS | 1 | 1 |
| Mycobacterium vanbaalenii PYR-1 | 1 | 1 |
| Mycobacterium flavescens PYR-GCK | 1 | 1 |
| Mycobacterium smegmatis str. MC2 155 | 1 | 1 |
| Mycobacterium abscessus ATCC 19977 | 1 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| rpfA |
*
Mycobacterium tuberculosis H37Rv Site: position = -233 score = 49.86 sequence = CGCCGATAGCACGCC... Gene: Rv0867c: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium leprae TN Site: position = -193 score = 39.48 sequence = AGGCGGGGACGCTAA... Gene: ML2151: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium marinum M Site: position = -222 score = 58.7 sequence = CCTACAACGCGCCGA... Gene: MMAR_4665: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium avium 104 Site: position = -296 score = 40.57 sequence = CCTCCCTATCGCGCC... Gene: MAV_0996: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium sp. JLS Site: position = -213 score = 40.72 sequence = GCCCGATAGCGCCGA... Gene: Mjls_4862: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -222 score = 63.06 sequence = CACCAATTGCGCCGA... Gene: Mvan_5049: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium flavescens PYR-GCK Site: position = -227 score = 67.57 sequence = ACCACCGATTGCGCC... Gene: Mflv_1703: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -216 score = 58.58 sequence = CGCCGGTAGCGCCGA... Gene: MSMEG_5700: Probable resuscitation-promoting factor RpfA |
*
Mycobacterium abscessus ATCC 19977 Site: position = -217 score = 54.04 sequence = CCATACCCGCGCACC... Gene: MAB_0869c: Probable resuscitation-promoting factor RpfA |
Probable resuscitation-promoting factor RpfA |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |