Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ydaO-yuaA - Mycobacteriaceae

Properties
Regulator type: RNA regulatory element
Name: ydaO-yuaA
RFAM: RF00379
Regulation mode:
Biological process: Osmotic stress response; Cell wall metabolism
Effector:
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium tuberculosis H37Rv 1 1
Mycobacterium leprae TN 1 1
Mycobacterium marinum M 1 1
Mycobacterium avium 104 1 1
Mycobacterium sp. JLS 1 1
Mycobacterium vanbaalenii PYR-1 1 1
Mycobacterium flavescens PYR-GCK 1 1
Mycobacterium smegmatis str. MC2 155 1 1
Mycobacterium abscessus ATCC 19977 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpfA
*
Mycobacterium tuberculosis H37Rv

Site:
position = -233
score = 49.86
sequence = CGCCGATAGCACGCC...

Gene: Rv0867c: Probable resuscitation-promoting factor RpfA
*
Mycobacterium leprae TN

Site:
position = -193
score = 39.48
sequence = AGGCGGGGACGCTAA...

Gene: ML2151: Probable resuscitation-promoting factor RpfA
*
Mycobacterium marinum M

Site:
position = -222
score = 58.7
sequence = CCTACAACGCGCCGA...

Gene: MMAR_4665: Probable resuscitation-promoting factor RpfA
*
Mycobacterium avium 104

Site:
position = -296
score = 40.57
sequence = CCTCCCTATCGCGCC...

Gene: MAV_0996: Probable resuscitation-promoting factor RpfA
*
Mycobacterium sp. JLS

Site:
position = -213
score = 40.72
sequence = GCCCGATAGCGCCGA...

Gene: Mjls_4862: Probable resuscitation-promoting factor RpfA
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -222
score = 63.06
sequence = CACCAATTGCGCCGA...

Gene: Mvan_5049: Probable resuscitation-promoting factor RpfA
*
Mycobacterium flavescens PYR-GCK

Site:
position = -227
score = 67.57
sequence = ACCACCGATTGCGCC...

Gene: Mflv_1703: Probable resuscitation-promoting factor RpfA
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -216
score = 58.58
sequence = CGCCGGTAGCGCCGA...

Gene: MSMEG_5700: Probable resuscitation-promoting factor RpfA
*
Mycobacterium abscessus ATCC 19977

Site:
position = -217
score = 54.04
sequence = CCATACCCGCGCACC...

Gene: MAB_0869c: Probable resuscitation-promoting factor RpfA
Probable resuscitation-promoting factor RpfA
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD