Regulog ykkC-yxkD - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | ||
| Rhizobium sp. NGR234 | 4 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 7 | 1 |
| Rhizobium etli CFN 42 | 7 | 1 |
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Mesorhizobium sp. BNC1 | ||
| Mesorhizobium loti MAFF303099 | ||
| Brucella melitensis 16M | ||
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 7 | 1 |
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | 1 | 1 |
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | 7 | 1 |
| Xanthobacter autotrophicus Py2 | 7 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| uctB |
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*
Rhizobium sp. NGR234 Site: position = -202 score = 82.33 sequence = CTGCAGATGTTTCTA... Gene: NGR_b03900: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -182 score = 75.22 sequence = GAGTTGGTGGCTAGG... Gene: pRL90288: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
*
Rhizobium etli CFN 42 Site: position = -187 score = 88.09 sequence = CTGAGTTGGTGGCTA... Gene: RHE_PE00123: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
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*
Rhodopseudomonas palustris CGA009 Site: position = -181 score = 80.09 sequence = CAGAGTTGGTGGCTA... Gene: RPA1410: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
|
*
Bradyrhizobium sp. BTAi1 Site: position = -177 score = 87.97 sequence = GAGTTGGCAGCTAGG... Gene: BBta_0739: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -113 score = 72.83 sequence = GAGTTGGTGGCTAGG... Gene: AZC_4397: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
*
Xanthobacter autotrophicus Py2 Site: position = -184 score = 69.8 sequence = ACGAGTTGGTGGCTA... Gene: Xaut_1227: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
| uctP |
|
Gene: NGR_b03890: Urea carboxylase-related ABC transporter, permease protein |
Gene: pRL90289: Urea carboxylase-related ABC transporter, permease protein |
Gene: RHE_PE00122: Urea carboxylase-related ABC transporter, permease protein |
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Gene: RPA1409: Urea carboxylase-related ABC transporter, permease protein |
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Gene: BBta_0741: Urea carboxylase-related ABC transporter, permease protein |
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Gene: AZC_4398: Urea carboxylase-related ABC transporter, permease protein |
Gene: Xaut_1226: Urea carboxylase-related ABC transporter, permease protein |
Urea carboxylase-related ABC transporter, permease protein |
| uctA |
|
Gene: NGR_b03880: Urea carboxylase-related ABC transporter, ATPase protein |
Gene: pRL90290: Urea carboxylase-related ABC transporter, ATPase protein |
Gene: RHE_PE00121: Urea carboxylase-related ABC transporter, ATPase protein |
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Gene: RPA1408: Urea carboxylase-related ABC transporter, ATPase protein |
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Gene: BBta_0742: Urea carboxylase-related ABC transporter, ATPase protein |
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Gene: AZC_4399: Urea carboxylase-related ABC transporter, ATPase protein |
Gene: Xaut_1225: Urea carboxylase-related ABC transporter, ATPase protein |
Urea carboxylase-related ABC transporter, ATPase protein |
| amt3 |
|
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Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| amt4 |
|
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Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| ucaA |
|
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Gene: pRL90293: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
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Gene: RPA1405: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
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Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
| ucaB |
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Gene: NGR_b03920: Allophanate hydrolase (EC 3.5.1.54) |
Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54) |
Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54) |
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Gene: mlr7070: Allophanate hydrolase (EC 3.5.1.54) |
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2
Rhodopseudomonas palustris CGA009 Gene: RPA1404: Allophanate hydrolase (EC 3.5.1.54) Gene: RPA1466: Allophanate hydrolase (EC 3.5.1.54) |
Gene: bll1044: Allophanate hydrolase (EC 3.5.1.54) |
Gene: BBta_0724: Allophanate hydrolase (EC 3.5.1.54) |
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Gene: AZC_1523: Allophanate hydrolase (EC 3.5.1.54) |
Gene: Xaut_4705: Allophanate hydrolase (EC 3.5.1.54) |
Allophanate hydrolase (EC 3.5.1.54) |
| ucaB2 |
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Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54) # truncated |
Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54) # truncated |
Allophanate hydrolase (EC 3.5.1.54) # truncated |
| speB |
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Gene: NGR_b03870: Agmatinase (EC 3.5.3.11) |
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Gene: BBta_0743: Agmatinase (EC 3.5.3.11) |
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Agmatinase (EC 3.5.3.11) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |