Regulog ykkC-yxkD - Rhizobiales

Properties
Regulator type:	RNA regulatory element
Name:	ykkC-yxkD
RFAM:	RF00442
Regulation mode:
Biological process:	Multidrug resistance
Effector:
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Rhizobiales
By RNA motif - ykkC-yxkD
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021
Rhizobium sp. NGR234	4	1
Rhizobium leguminosarum bv. viciae 3841	7	1
Rhizobium etli CFN 42	7	1
Agrobacterium tumefaciens str. C58 (Cereon)
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099
Brucella melitensis 16M
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009	7	1
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1	1	1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571	7	1
Xanthobacter autotrophicus Py2	7	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
uctB	Sinorhizobium meliloti 1021	* Rhizobium sp. NGR234 Site: position = -202 score = 82.33 sequence = CTGCAGATGTTTCTA... Gene: NGR_b03900: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -182 score = 75.22 sequence = GAGTTGGTGGCTAGG... Gene: pRL90288: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	* Rhizobium etli CFN 42 Site: position = -187 score = 88.09 sequence = CTGAGTTGGTGGCTA... Gene: RHE_PE00123: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -181 score = 80.09 sequence = CAGAGTTGGTGGCTA... Gene: RPA1410: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -177 score = 87.97 sequence = GAGTTGGCAGCTAGG... Gene: BBta_0739: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -113 score = 72.83 sequence = GAGTTGGTGGCTAGG... Gene: AZC_4397: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	* Xanthobacter autotrophicus Py2 Site: position = -184 score = 69.8 sequence = ACGAGTTGGTGGCTA... Gene: Xaut_1227: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
uctP	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03890: Urea carboxylase-related ABC transporter, permease protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90289: Urea carboxylase-related ABC transporter, permease protein	Rhizobium etli CFN 42 Gene: RHE_PE00122: Urea carboxylase-related ABC transporter, permease protein	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1409: Urea carboxylase-related ABC transporter, permease protein	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0741: Urea carboxylase-related ABC transporter, permease protein	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4398: Urea carboxylase-related ABC transporter, permease protein	Xanthobacter autotrophicus Py2 Gene: Xaut_1226: Urea carboxylase-related ABC transporter, permease protein	Urea carboxylase-related ABC transporter, permease protein
uctA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03880: Urea carboxylase-related ABC transporter, ATPase protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90290: Urea carboxylase-related ABC transporter, ATPase protein	Rhizobium etli CFN 42 Gene: RHE_PE00121: Urea carboxylase-related ABC transporter, ATPase protein	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1408: Urea carboxylase-related ABC transporter, ATPase protein	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0742: Urea carboxylase-related ABC transporter, ATPase protein	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4399: Urea carboxylase-related ABC transporter, ATPase protein	Xanthobacter autotrophicus Py2 Gene: Xaut_1225: Urea carboxylase-related ABC transporter, ATPase protein	Urea carboxylase-related ABC transporter, ATPase protein
amt3	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Rhizobium etli CFN 42 Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Xanthobacter autotrophicus Py2 Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt4	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Rhizobium etli CFN 42 Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Xanthobacter autotrophicus Py2 Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90293: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Rhizobium etli CFN 42 Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1405: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Xanthobacter autotrophicus Py2 Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
ucaB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03920: Allophanate hydrolase (EC 3.5.1.54)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54)	Rhizobium etli CFN 42 Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr7070: Allophanate hydrolase (EC 3.5.1.54)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	2 Rhodopseudomonas palustris CGA009 Gene: RPA1404: Allophanate hydrolase (EC 3.5.1.54) Gene: RPA1466: Allophanate hydrolase (EC 3.5.1.54)	Bradyrhizobium japonicum USDA 110 Gene: bll1044: Allophanate hydrolase (EC 3.5.1.54)	Bradyrhizobium sp. BTAi1 Gene: BBta_0724: Allophanate hydrolase (EC 3.5.1.54)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1523: Allophanate hydrolase (EC 3.5.1.54)	Xanthobacter autotrophicus Py2 Gene: Xaut_4705: Allophanate hydrolase (EC 3.5.1.54)	Allophanate hydrolase (EC 3.5.1.54)
ucaB2	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54) # truncated	Xanthobacter autotrophicus Py2 Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54) # truncated	Allophanate hydrolase (EC 3.5.1.54) # truncated
speB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03870: Agmatinase (EC 3.5.3.11)	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0743: Agmatinase (EC 3.5.3.11)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Agmatinase (EC 3.5.3.11)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ykkC-yxkD - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --