Regulog serC - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | serC |
| RFAM: | RF00517 |
| Regulation mode: | |
| Biological process: | Serine biosynthesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - serC
- By pathway - Serine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 2 | 1 |
| Rhizobium sp. NGR234 | 2 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 2 | 1 |
| Rhizobium etli CFN 42 | 2 | 1 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 2 | 1 |
| Mesorhizobium sp. BNC1 | 2 | 1 |
| Mesorhizobium loti MAFF303099 | 2 | 1 |
| Brucella melitensis 16M | 2 | 1 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 2 | 1 |
| Bradyrhizobium japonicum USDA 110 | 2 | 1 |
| Bradyrhizobium sp. BTAi1 | 2 | 1 |
| Nitrobacter winogradskyi Nb-255 | 2 | 1 |
| Azorhizobium caulinodans ORS 571 | 2 | 1 |
| Xanthobacter autotrophicus Py2 | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| serC |
*
Sinorhizobium meliloti 1021 Site: position = -51 score = 71.03 sequence = GCGGCGGGACACCCC... Gene: SMc00640: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Rhizobium sp. NGR234 Site: position = -51 score = 71.03 sequence = ACGGCGGGACACCCC... Gene: NGR_c27710: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -53 score = 64.87 sequence = GCGGCGGGACACCCT... Gene: RL3961: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Rhizobium etli CFN 42 Site: position = -53 score = 65.07 sequence = GCGGCGGGACACCCT... Gene: RHE_CH03455: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -52 score = 62.01 sequence = GCGGCAGGACACCTC... Gene: Atu3707: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Mesorhizobium sp. BNC1 Site: position = -56 score = 59.14 sequence = GCAGCGGGCTACCCC... Gene: Meso_3162: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Mesorhizobium loti MAFF303099 Site: position = -54 score = 65.02 sequence = TCCGTGGGCCACCCC... Gene: mll3876: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Brucella melitensis 16M Site: position = -54 score = 60.37 sequence = AGTGGGCCACGTCTC... Gene: BMEI0347: Phosphoserine aminotransferase (EC 2.6.1.52) |
|
*
Rhodopseudomonas palustris CGA009 Site: position = -51 score = 62.85 sequence = GCAGCGGGAAACCTC... Gene: RPA4309: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Bradyrhizobium japonicum USDA 110 Site: position = -52 score = 65.51 sequence = GCGGCGGGACACCTC... Gene: bll7402: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Bradyrhizobium sp. BTAi1 Site: position = -50 score = 63.43 sequence = AGCGGGACACCTCCC... Gene: BBta_1825: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Nitrobacter winogradskyi Nb-255 Site: position = -52 score = 63.62 sequence = GCGGCGGGACACCTC... Gene: Nwi_2969: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Azorhizobium caulinodans ORS 571 Site: position = -50 score = 58.58 sequence = CGCGGGACACTCCCC... Gene: AZC_0984: Phosphoserine aminotransferase (EC 2.6.1.52) |
*
Xanthobacter autotrophicus Py2 Site: position = -53 score = 62.12 sequence = TCCGTGGGACACCTC... Gene: Xaut_1203: Phosphoserine aminotransferase (EC 2.6.1.52) |
Phosphoserine aminotransferase (EC 2.6.1.52) |
| serA |
Gene: SMc00641: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: NGR_c27700: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: RL3960: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: RHE_CH03454: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Atu3706: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Meso_3161: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: mll3875: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: BMEI0349: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
|
Gene: RPA4308: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: bll7401: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: BBta_1826: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Nwi_2968: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: AZC_0985: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Xaut_1202: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |