Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog serC - Rhizobiales

Properties
Regulator type: RNA regulatory element
Name: serC
RFAM: RF00517
Regulation mode:
Biological process: Serine biosynthesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 2 1
Rhizobium sp. NGR234 2 1
Rhizobium leguminosarum bv. viciae 3841 2 1
Rhizobium etli CFN 42 2 1
Agrobacterium tumefaciens str. C58 (Cereon) 2 1
Mesorhizobium sp. BNC1 2 1
Mesorhizobium loti MAFF303099 2 1
Brucella melitensis 16M 2 1
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009 2 1
Bradyrhizobium japonicum USDA 110 2 1
Bradyrhizobium sp. BTAi1 2 1
Nitrobacter winogradskyi Nb-255 2 1
Azorhizobium caulinodans ORS 571 2 1
Xanthobacter autotrophicus Py2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
serC
*
Sinorhizobium meliloti 1021

Site:
position = -51
score = 71.03
sequence = GCGGCGGGACACCCC...

Gene: SMc00640: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Rhizobium sp. NGR234

Site:
position = -51
score = 71.03
sequence = ACGGCGGGACACCCC...

Gene: NGR_c27710: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -53
score = 64.87
sequence = GCGGCGGGACACCCT...

Gene: RL3961: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Rhizobium etli CFN 42

Site:
position = -53
score = 65.07
sequence = GCGGCGGGACACCCT...

Gene: RHE_CH03455: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -52
score = 62.01
sequence = GCGGCAGGACACCTC...

Gene: Atu3707: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Mesorhizobium sp. BNC1

Site:
position = -56
score = 59.14
sequence = GCAGCGGGCTACCCC...

Gene: Meso_3162: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Mesorhizobium loti MAFF303099

Site:
position = -54
score = 65.02
sequence = TCCGTGGGCCACCCC...

Gene: mll3876: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Brucella melitensis 16M

Site:
position = -54
score = 60.37
sequence = AGTGGGCCACGTCTC...

Gene: BMEI0347: Phosphoserine aminotransferase (EC 2.6.1.52)
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -51
score = 62.85
sequence = GCAGCGGGAAACCTC...

Gene: RPA4309: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Bradyrhizobium japonicum USDA 110

Site:
position = -52
score = 65.51
sequence = GCGGCGGGACACCTC...

Gene: bll7402: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Bradyrhizobium sp. BTAi1

Site:
position = -50
score = 63.43
sequence = AGCGGGACACCTCCC...

Gene: BBta_1825: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Nitrobacter winogradskyi Nb-255

Site:
position = -52
score = 63.62
sequence = GCGGCGGGACACCTC...

Gene: Nwi_2969: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Azorhizobium caulinodans ORS 571

Site:
position = -50
score = 58.58
sequence = CGCGGGACACTCCCC...

Gene: AZC_0984: Phosphoserine aminotransferase (EC 2.6.1.52)
*
Xanthobacter autotrophicus Py2

Site:
position = -53
score = 62.12
sequence = TCCGTGGGACACCTC...

Gene: Xaut_1203: Phosphoserine aminotransferase (EC 2.6.1.52)
Phosphoserine aminotransferase (EC 2.6.1.52)
serA
 
Sinorhizobium meliloti 1021

Gene: SMc00641: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Rhizobium sp. NGR234

Gene: NGR_c27700: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3960: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Rhizobium etli CFN 42

Gene: RHE_CH03454: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3706: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Mesorhizobium sp. BNC1

Gene: Meso_3161: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Mesorhizobium loti MAFF303099

Gene: mll3875: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Brucella melitensis 16M

Gene: BMEI0349: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA4308: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bradyrhizobium japonicum USDA 110

Gene: bll7401: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_1826: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2968: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0985: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1202: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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