Regulog yybP-ykoY - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 1 | 1 |
| Chloroflexus sp. Y-400-fl | 1 | 1 |
| Roseiflexus castenholzii DSM 13941 | 1 | 1 |
| Roseiflexus sp. RS-1 | ||
| Herpetosiphon aurantiacus ATCC 23779 | 2 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| atcL |
Gene: Cagg_2172: Calcium-transporting ATPase (EC 3.6.3.8) |
Gene: Chy400_1327: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -150 score = 50.52 sequence = TAGTCGTAGATGGGG... Gene: Rcas_0372: Calcium-transporting ATPase (EC 3.6.3.8) |
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|
Calcium-transporting ATPase (EC 3.6.3.8) |
| CRON 2. | ||||||
| ykoY2 |
|
|
|
|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -212 score = 68.92 sequence = ACGAACTGCATGGGG... Gene: Haur_0016: Membrane protein TerC, possibly involved in tellurium resistance |
Membrane protein TerC, possibly involved in tellurium resistance |
| CRON 3. | ||||||
| ykoY |
*
Chloroflexus aggregans DSM 9485 Site: position = -199 score = 45.65 sequence = AGTTCAAGAGGTTGG... Gene: Cagg_2919: Membrane protein TerC, possibly involved in tellurium resistance |
*
Chloroflexus sp. Y-400-fl Site: position = -190 score = 51.15 sequence = AGTGCGTAACGTTGG... Gene: Chy400_2382: Membrane protein TerC, possibly involved in tellurium resistance |
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|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -181 score = 53.25 sequence = TACGTTCCGTTGGGG... Gene: Haur_1705: Membrane protein TerC, possibly involved in tellurium resistance |
Membrane protein TerC, possibly involved in tellurium resistance |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |