Regulog PyrR - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - PyrR
- By effector - PyrR
- By pathway - Pyrimidine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 3 | 1 |
| Chloroflexus sp. Y-400-fl | 3 | 1 |
| Roseiflexus castenholzii DSM 13941 | ||
| Roseiflexus sp. RS-1 | ||
| Herpetosiphon aurantiacus ATCC 23779 | 4 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| Haur_3989 |
|
|
|
|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -124 score = 42.07 sequence = AGTCCTTTAAATGCG... Gene: Haur_3989: Glycosyl transferase |
Glycosyl transferase |
| pyrR |
*
Chloroflexus aggregans DSM 9485 Site: position = -160 score = 53.1 sequence = TGCAACCTTTAATAC... Gene: Cagg_3362: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Chloroflexus sp. Y-400-fl Site: position = -152 score = 49.13 sequence = TCGCCTTTAATACAG... Gene: Chy400_2042: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: Rcas_2433: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: RoseRS_2864: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: Haur_3990: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
| clpC |
|
|
|
|
Gene: Haur_3991: ATP-dependent Clp protease, ATP-binding subunit ClpC |
ATP-dependent Clp protease, ATP-binding subunit ClpC |
| pyrB |
Gene: Cagg_3361: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: Chy400_2043: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: Rcas_2434: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: RoseRS_2863: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: Haur_3992: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Aspartate carbamoyltransferase (EC 2.1.3.2) |
| pyrC |
Gene: Cagg_3360: Dihydroorotase (EC 3.5.2.3) |
Gene: Chy400_2044: Dihydroorotase (EC 3.5.2.3) |
Gene: Rcas_2435: Dihydroorotase (EC 3.5.2.3) |
Gene: RoseRS_2862: Dihydroorotase (EC 3.5.2.3) |
Gene: Haur_4100: Dihydroorotase (EC 3.5.2.3) |
Dihydroorotase (EC 3.5.2.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |