Regulog L10_leader - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 2 | 1 |
| Chloroflexus sp. Y-400-fl | 2 | 1 |
| Roseiflexus castenholzii DSM 13941 | 2 | 1 |
| Roseiflexus sp. RS-1 | 2 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 | 2 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| rplJ |
*
Chloroflexus aggregans DSM 9485 Site: position = -218 score = 35.82 sequence = TAGTTTAATCTCTTA... Gene: Cagg_1474: LSU ribosomal protein L10p (P0) |
*
Chloroflexus sp. Y-400-fl Site: position = -207 score = 34.65 sequence = ATTTGCATCGTTAGC... Gene: Chy400_2356: LSU ribosomal protein L10p (P0) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -163 score = 33.94 sequence = ACAGGTGAATAGTCG... Gene: Rcas_4318: LSU ribosomal protein L10p (P0) |
*
Roseiflexus sp. RS-1 Site: position = -159 score = 55.25 sequence = GATATATATGCTAAG... Gene: RoseRS_3328: LSU ribosomal protein L10p (P0) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -175 score = 62.6 sequence = CGGTACAAGAAATAC... Gene: Haur_0140: LSU ribosomal protein L10p (P0) |
LSU ribosomal protein L10p (P0) |
| rplL |
Gene: Cagg_1473: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Chy400_2357: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Rcas_4317: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: RoseRS_3329: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Haur_0141: LSU ribosomal protein L7/L12 (P1/P2) |
LSU ribosomal protein L7/L12 (P1/P2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |