Regulog Thr_leader - Shewanellaceae

Properties
Regulator type:	RNA regulatory element
Name:	Thr_leader
RFAM:	RF00506
Regulation mode:
Biological process:	Threonine biosynthesis
Effector:
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - Thr_leader
By pathway - Threonine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	3	1
Shewanella putrefaciens CN-32	3	1
Shewanella sp W3-18-1	3	1
Shewanella sp ANA-3	3	1
Shewanella sp MR-4	3	1
Shewanella sp MR-7	3	1
Shewanella baltica OS155	3	1
Shewanella denitrificans OS217	3	1
Shewanella frigidimarina NCIMB 400	3	1
Shewanella amazonensis SB2B	3	1
Shewanella loihica PV-4	3	1
Shewanella pealeana ATCC 700345	3	1
Shewanella halifaxensis HAW-EB4	3	1
Shewanella piezotolerans WP3	3	1
Shewanella sediminis HAW-EB3	3	1
Shewanella woodyi ATCC 51908	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
thrA	* Shewanella oneidensis MR-1 Site: position = -153 score = 39.81 sequence = GTAATTACTATTATT... Gene: SO_3415: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella putrefaciens CN-32 Site: position = -164 score = 42.98 sequence = AGGTTTCGTAGTAGT... Gene: Sputcn32_2735: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella sp W3-18-1 Site: position = -162 score = 42.98 sequence = GTTTCGTAGTAGTTA... Gene: Sputw3181_1277: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella sp ANA-3 Site: position = -162 score = 43.19 sequence = GTTTTGTAGTAATTA... Gene: Shewana3_1139: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella sp MR-4 Site: position = -162 score = 43.19 sequence = GTTTTGTAGTAATTA... Gene: Shewmr4_1138: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella sp MR-7 Site: position = -162 score = 43.19 sequence = GTTTTGTAGTAATTA... Gene: Shewmr7_1209: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella baltica OS155 Site: position = -162 score = 46.45 sequence = GTTTCGTAGTAACTA... Gene: Sbal_1227: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella denitrificans OS217 Site: position = -183 score = 79.53 sequence = GCTCAGAGTATTACT... Gene: Sden_2740: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella frigidimarina NCIMB 400 Site: position = -185 score = 51.79 sequence = CATGCTCGTTGTAAT... Gene: Sfri_2906: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella amazonensis SB2B Site: position = -151 score = 36.65 sequence = CGCAGTAGTAACCAC... Gene: Sama_0905: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella loihica PV-4 Site: position = -155 score = 29.21 sequence = TAATCTCGTAGTAAC... Gene: Shew_1079: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella pealeana ATCC 700345 Site: position = -154 score = 43.89 sequence = CCACGTTTTAATGAT... Gene: Spea_1066: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella halifaxensis HAW-EB4 Site: position = -153 score = 54.44 sequence = CGTTTTAATGAACAC... Gene: Shal_1114: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella piezotolerans WP3 Site: position = -158 score = 45.58 sequence = GCCATCAGTTAATGA... Gene: swp_3750: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella sediminis HAW-EB3 Site: position = -149 score = 40.99 sequence = TACAGTTGTAACCAC... Gene: Ssed_1175: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	* Shewanella woodyi ATCC 51908 Site: position = -158 score = 39.23 sequence = AAATCGAGTTGTAAC... Gene: Swoo_1270: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
thrB	Shewanella oneidensis MR-1 Gene: SO_3414: Homoserine kinase (EC 2.7.1.39)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2734: Homoserine kinase (EC 2.7.1.39)	Shewanella sp W3-18-1 Gene: Sputw3181_1278: Homoserine kinase (EC 2.7.1.39)	Shewanella sp ANA-3 Gene: Shewana3_1140: Homoserine kinase (EC 2.7.1.39)	Shewanella sp MR-4 Gene: Shewmr4_1139: Homoserine kinase (EC 2.7.1.39)	Shewanella sp MR-7 Gene: Shewmr7_1210: Homoserine kinase (EC 2.7.1.39)	Shewanella baltica OS155 Gene: Sbal_1228: Homoserine kinase (EC 2.7.1.39)	Shewanella denitrificans OS217 Gene: Sden_2739: Homoserine kinase (EC 2.7.1.39)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2905: Homoserine kinase (EC 2.7.1.39)	Shewanella amazonensis SB2B Gene: Sama_0906: Homoserine kinase (EC 2.7.1.39)	Shewanella loihica PV-4 Gene: Shew_1080: Homoserine kinase (EC 2.7.1.39)	Shewanella pealeana ATCC 700345 Gene: Spea_1067: Homoserine kinase (EC 2.7.1.39)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1115: Homoserine kinase (EC 2.7.1.39)	Shewanella piezotolerans WP3 Gene: swp_3749: Homoserine kinase (EC 2.7.1.39)	Shewanella sediminis HAW-EB3 Gene: Ssed_1176: Homoserine kinase (EC 2.7.1.39)	Shewanella woodyi ATCC 51908 Gene: Swoo_1271: Homoserine kinase (EC 2.7.1.39)	Homoserine kinase (EC 2.7.1.39)
thrC	Shewanella oneidensis MR-1 Gene: SO_3413: Threonine synthase (EC 4.2.3.1)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2733: Threonine synthase (EC 4.2.3.1)	Shewanella sp W3-18-1 Gene: Sputw3181_1279: Threonine synthase (EC 4.2.3.1)	Shewanella sp ANA-3 Gene: Shewana3_1141: Threonine synthase (EC 4.2.3.1)	Shewanella sp MR-4 Gene: Shewmr4_1140: Threonine synthase (EC 4.2.3.1)	Shewanella sp MR-7 Gene: Shewmr7_1211: Threonine synthase (EC 4.2.3.1)	Shewanella baltica OS155 Gene: Sbal_1229: Threonine synthase (EC 4.2.3.1)	Shewanella denitrificans OS217 Gene: Sden_2738: Threonine synthase (EC 4.2.3.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2904: Threonine synthase (EC 4.2.3.1)	Shewanella amazonensis SB2B Gene: Sama_0907: Threonine synthase (EC 4.2.3.1)	Shewanella loihica PV-4 Gene: Shew_1081: Threonine synthase (EC 4.2.3.1)	Shewanella pealeana ATCC 700345 Gene: Spea_1068: Threonine synthase (EC 4.2.3.1)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1116: Threonine synthase (EC 4.2.3.1)	Shewanella piezotolerans WP3 Gene: swp_3748: Threonine synthase (EC 4.2.3.1)	Shewanella sediminis HAW-EB3 Gene: Ssed_1177: Threonine synthase (EC 4.2.3.1)	Shewanella woodyi ATCC 51908 Gene: Swoo_1272: Threonine synthase (EC 4.2.3.1)	Threonine synthase (EC 4.2.3.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Thr_leader - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --