Regulog Thr_leader - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | Thr_leader |
| RFAM: | RF00506 |
| Regulation mode: | |
| Biological process: | Threonine biosynthesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Thr_leader
- By pathway - Threonine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 3 | 1 |
| Shewanella putrefaciens CN-32 | 3 | 1 |
| Shewanella sp W3-18-1 | 3 | 1 |
| Shewanella sp ANA-3 | 3 | 1 |
| Shewanella sp MR-4 | 3 | 1 |
| Shewanella sp MR-7 | 3 | 1 |
| Shewanella baltica OS155 | 3 | 1 |
| Shewanella denitrificans OS217 | 3 | 1 |
| Shewanella frigidimarina NCIMB 400 | 3 | 1 |
| Shewanella amazonensis SB2B | 3 | 1 |
| Shewanella loihica PV-4 | 3 | 1 |
| Shewanella pealeana ATCC 700345 | 3 | 1 |
| Shewanella halifaxensis HAW-EB4 | 3 | 1 |
| Shewanella piezotolerans WP3 | 3 | 1 |
| Shewanella sediminis HAW-EB3 | 3 | 1 |
| Shewanella woodyi ATCC 51908 | 3 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| thrA |
*
Shewanella oneidensis MR-1 Site: position = -153 score = 39.81 sequence = GTAATTACTATTATT... Gene: SO_3415: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella putrefaciens CN-32 Site: position = -164 score = 42.98 sequence = AGGTTTCGTAGTAGT... Gene: Sputcn32_2735: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella sp W3-18-1 Site: position = -162 score = 42.98 sequence = GTTTCGTAGTAGTTA... Gene: Sputw3181_1277: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella sp ANA-3 Site: position = -162 score = 43.19 sequence = GTTTTGTAGTAATTA... Gene: Shewana3_1139: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella sp MR-4 Site: position = -162 score = 43.19 sequence = GTTTTGTAGTAATTA... Gene: Shewmr4_1138: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella sp MR-7 Site: position = -162 score = 43.19 sequence = GTTTTGTAGTAATTA... Gene: Shewmr7_1209: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella baltica OS155 Site: position = -162 score = 46.45 sequence = GTTTCGTAGTAACTA... Gene: Sbal_1227: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella denitrificans OS217 Site: position = -183 score = 79.53 sequence = GCTCAGAGTATTACT... Gene: Sden_2740: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -185 score = 51.79 sequence = CATGCTCGTTGTAAT... Gene: Sfri_2906: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella amazonensis SB2B Site: position = -151 score = 36.65 sequence = CGCAGTAGTAACCAC... Gene: Sama_0905: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella loihica PV-4 Site: position = -155 score = 29.21 sequence = TAATCTCGTAGTAAC... Gene: Shew_1079: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella pealeana ATCC 700345 Site: position = -154 score = 43.89 sequence = CCACGTTTTAATGAT... Gene: Spea_1066: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -153 score = 54.44 sequence = CGTTTTAATGAACAC... Gene: Shal_1114: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella piezotolerans WP3 Site: position = -158 score = 45.58 sequence = GCCATCAGTTAATGA... Gene: swp_3750: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella sediminis HAW-EB3 Site: position = -149 score = 40.99 sequence = TACAGTTGTAACCAC... Gene: Ssed_1175: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
*
Shewanella woodyi ATCC 51908 Site: position = -158 score = 39.23 sequence = AAATCGAGTTGTAAC... Gene: Swoo_1270: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
| thrB |
Gene: SO_3414: Homoserine kinase (EC 2.7.1.39) |
Gene: Sputcn32_2734: Homoserine kinase (EC 2.7.1.39) |
Gene: Sputw3181_1278: Homoserine kinase (EC 2.7.1.39) |
Gene: Shewana3_1140: Homoserine kinase (EC 2.7.1.39) |
Gene: Shewmr4_1139: Homoserine kinase (EC 2.7.1.39) |
Gene: Shewmr7_1210: Homoserine kinase (EC 2.7.1.39) |
Gene: Sbal_1228: Homoserine kinase (EC 2.7.1.39) |
Gene: Sden_2739: Homoserine kinase (EC 2.7.1.39) |
Gene: Sfri_2905: Homoserine kinase (EC 2.7.1.39) |
Gene: Sama_0906: Homoserine kinase (EC 2.7.1.39) |
Gene: Shew_1080: Homoserine kinase (EC 2.7.1.39) |
Gene: Spea_1067: Homoserine kinase (EC 2.7.1.39) |
Gene: Shal_1115: Homoserine kinase (EC 2.7.1.39) |
Gene: swp_3749: Homoserine kinase (EC 2.7.1.39) |
Gene: Ssed_1176: Homoserine kinase (EC 2.7.1.39) |
Gene: Swoo_1271: Homoserine kinase (EC 2.7.1.39) |
Homoserine kinase (EC 2.7.1.39) |
| thrC |
Gene: SO_3413: Threonine synthase (EC 4.2.3.1) |
Gene: Sputcn32_2733: Threonine synthase (EC 4.2.3.1) |
Gene: Sputw3181_1279: Threonine synthase (EC 4.2.3.1) |
Gene: Shewana3_1141: Threonine synthase (EC 4.2.3.1) |
Gene: Shewmr4_1140: Threonine synthase (EC 4.2.3.1) |
Gene: Shewmr7_1211: Threonine synthase (EC 4.2.3.1) |
Gene: Sbal_1229: Threonine synthase (EC 4.2.3.1) |
Gene: Sden_2738: Threonine synthase (EC 4.2.3.1) |
Gene: Sfri_2904: Threonine synthase (EC 4.2.3.1) |
Gene: Sama_0907: Threonine synthase (EC 4.2.3.1) |
Gene: Shew_1081: Threonine synthase (EC 4.2.3.1) |
Gene: Spea_1068: Threonine synthase (EC 4.2.3.1) |
Gene: Shal_1116: Threonine synthase (EC 4.2.3.1) |
Gene: swp_3748: Threonine synthase (EC 4.2.3.1) |
Gene: Ssed_1177: Threonine synthase (EC 4.2.3.1) |
Gene: Swoo_1272: Threonine synthase (EC 4.2.3.1) |
Threonine synthase (EC 4.2.3.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |