Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog S15 - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: S15
RFAM: RF00114
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 1 1
Shewanella putrefaciens CN-32 1 1
Shewanella sp W3-18-1 1 1
Shewanella sp ANA-3 1 1
Shewanella sp MR-4 1 1
Shewanella sp MR-7 1 1
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217 1 1
Shewanella frigidimarina NCIMB 400 1 1
Shewanella amazonensis SB2B 1 1
Shewanella loihica PV-4 1 1
Shewanella pealeana ATCC 700345 1 1
Shewanella halifaxensis HAW-EB4 1 1
Shewanella piezotolerans WP3 1 1
Shewanella sediminis HAW-EB3 1 1
Shewanella woodyi ATCC 51908 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpsO
*
Shewanella oneidensis MR-1

Site:
position = -56
score = 98.61
sequence = CCTCTGGCTGAGTTA...

Gene: SO_1207: SSU ribosomal protein S15p (S13e)
*
Shewanella putrefaciens CN-32

Site:
position = -58
score = 98.25
sequence = GCCCTCTGGCTGAGT...

Gene: Sputcn32_2831: SSU ribosomal protein S15p (S13e)
*
Shewanella sp W3-18-1

Site:
position = -56
score = 98.25
sequence = CCTCTGGCTGAGTTA...

Gene: Sputw3181_1073: SSU ribosomal protein S15p (S13e)
*
Shewanella sp ANA-3

Site:
position = -56
score = 95.76
sequence = CCTCTGGCTGAGTTA...

Gene: Shewana3_1033: SSU ribosomal protein S15p (S13e)
*
Shewanella sp MR-4

Site:
position = -56
score = 95.76
sequence = CCTCTGGCTGAGTTA...

Gene: Shewmr4_1029: SSU ribosomal protein S15p (S13e)
*
Shewanella sp MR-7

Site:
position = -56
score = 95.76
sequence = CCTCTGGCTGAGTTA...

Gene: Shewmr7_1094: SSU ribosomal protein S15p (S13e)
*
Shewanella baltica OS155

Site:
position = -58
score = 96.52
sequence = GCCCTCTGGCTGAGT...

Gene: Sbal_3236: SSU ribosomal protein S15p (S13e)
*
Shewanella denitrificans OS217

Site:
position = -57
score = 103.08
sequence = CCTCTGGCTGAGTTA...

Gene: Sden_1010: SSU ribosomal protein S15p (S13e)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -56
score = 96.24
sequence = ACTCTGGCTGAGTTA...

Gene: Sfri_0993: SSU ribosomal protein S15p (S13e)
*
Shewanella amazonensis SB2B

Site:
position = -56
score = 102.35
sequence = TTCTTGGCTGAGTTA...

Gene: Sama_0964: SSU ribosomal protein S15p (S13e)
*
Shewanella loihica PV-4

Site:
position = -56
score = 99.15
sequence = TCTCTTTGGCTGAGT...

Gene: Shew_2824: SSU ribosomal protein S15p (S13e)
*
Shewanella pealeana ATCC 700345

Site:
position = -61
score = 99.6
sequence = CCCCTTTGGCTGAGT...

Gene: Spea_3057: SSU ribosomal protein S15p (S13e)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -60
score = 100.73
sequence = CCCCTTTGGCTGAGT...

Gene: Shal_3144: SSU ribosomal protein S15p (S13e)
*
Shewanella piezotolerans WP3

Site:
position = -57
score = 102.32
sequence = ACTTTGGCTGAGTTA...

Gene: swp_1221: SSU ribosomal protein S15p (S13e)
*
Shewanella sediminis HAW-EB3

Site:
position = -60
score = 94.1
sequence = TCACTTTAGCTGAGT...

Gene: Ssed_3386: SSU ribosomal protein S15p (S13e)
*
Shewanella woodyi ATCC 51908

Site:
position = -61
score = 90.6
sequence = TCGCTTTAGCTGAGT...

Gene: Swoo_3558: SSU ribosomal protein S15p (S13e)
SSU ribosomal protein S15p (S13e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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