Regulog S15 - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 1 | 1 |
| Shewanella putrefaciens CN-32 | 1 | 1 |
| Shewanella sp W3-18-1 | 1 | 1 |
| Shewanella sp ANA-3 | 1 | 1 |
| Shewanella sp MR-4 | 1 | 1 |
| Shewanella sp MR-7 | 1 | 1 |
| Shewanella baltica OS155 | 1 | 1 |
| Shewanella denitrificans OS217 | 1 | 1 |
| Shewanella frigidimarina NCIMB 400 | 1 | 1 |
| Shewanella amazonensis SB2B | 1 | 1 |
| Shewanella loihica PV-4 | 1 | 1 |
| Shewanella pealeana ATCC 700345 | 1 | 1 |
| Shewanella halifaxensis HAW-EB4 | 1 | 1 |
| Shewanella piezotolerans WP3 | 1 | 1 |
| Shewanella sediminis HAW-EB3 | 1 | 1 |
| Shewanella woodyi ATCC 51908 | 1 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| rpsO |
*
Shewanella oneidensis MR-1 Site: position = -56 score = 98.61 sequence = CCTCTGGCTGAGTTA... Gene: SO_1207: SSU ribosomal protein S15p (S13e) |
*
Shewanella putrefaciens CN-32 Site: position = -58 score = 98.25 sequence = GCCCTCTGGCTGAGT... Gene: Sputcn32_2831: SSU ribosomal protein S15p (S13e) |
*
Shewanella sp W3-18-1 Site: position = -56 score = 98.25 sequence = CCTCTGGCTGAGTTA... Gene: Sputw3181_1073: SSU ribosomal protein S15p (S13e) |
*
Shewanella sp ANA-3 Site: position = -56 score = 95.76 sequence = CCTCTGGCTGAGTTA... Gene: Shewana3_1033: SSU ribosomal protein S15p (S13e) |
*
Shewanella sp MR-4 Site: position = -56 score = 95.76 sequence = CCTCTGGCTGAGTTA... Gene: Shewmr4_1029: SSU ribosomal protein S15p (S13e) |
*
Shewanella sp MR-7 Site: position = -56 score = 95.76 sequence = CCTCTGGCTGAGTTA... Gene: Shewmr7_1094: SSU ribosomal protein S15p (S13e) |
*
Shewanella baltica OS155 Site: position = -58 score = 96.52 sequence = GCCCTCTGGCTGAGT... Gene: Sbal_3236: SSU ribosomal protein S15p (S13e) |
*
Shewanella denitrificans OS217 Site: position = -57 score = 103.08 sequence = CCTCTGGCTGAGTTA... Gene: Sden_1010: SSU ribosomal protein S15p (S13e) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -56 score = 96.24 sequence = ACTCTGGCTGAGTTA... Gene: Sfri_0993: SSU ribosomal protein S15p (S13e) |
*
Shewanella amazonensis SB2B Site: position = -56 score = 102.35 sequence = TTCTTGGCTGAGTTA... Gene: Sama_0964: SSU ribosomal protein S15p (S13e) |
*
Shewanella loihica PV-4 Site: position = -56 score = 99.15 sequence = TCTCTTTGGCTGAGT... Gene: Shew_2824: SSU ribosomal protein S15p (S13e) |
*
Shewanella pealeana ATCC 700345 Site: position = -61 score = 99.6 sequence = CCCCTTTGGCTGAGT... Gene: Spea_3057: SSU ribosomal protein S15p (S13e) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -60 score = 100.73 sequence = CCCCTTTGGCTGAGT... Gene: Shal_3144: SSU ribosomal protein S15p (S13e) |
*
Shewanella piezotolerans WP3 Site: position = -57 score = 102.32 sequence = ACTTTGGCTGAGTTA... Gene: swp_1221: SSU ribosomal protein S15p (S13e) |
*
Shewanella sediminis HAW-EB3 Site: position = -60 score = 94.1 sequence = TCACTTTAGCTGAGT... Gene: Ssed_3386: SSU ribosomal protein S15p (S13e) |
*
Shewanella woodyi ATCC 51908 Site: position = -61 score = 90.6 sequence = TCGCTTTAGCTGAGT... Gene: Swoo_3558: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |