Regulog L21_leader - Cyanobacteria
| Regulator type: | RNA regulatory element |
| Name: | L21_leader |
| RFAM: | RF00559 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By RNA motif - L21_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Synechococcus sp. PCC 7002 | ||
| Synechocystis sp. PCC 6803 | ||
| Cyanothece sp. ATCC 51142 | ||
| Cyanothece sp. PCC 8801 | ||
| Cyanothece sp. PCC 7425 | ||
| Microcystis aeruginosa NIES-843 | ||
| Nostoc sp. PCC 7120 | ||
| Trichodesmium erythraeum IMS101 | ||
| Synechococcus elongatus PCC 7942 | ||
| Prochlorococcus marinus str. MIT 9313 | ||
| Synechococcus sp. JA-3-3Ab | 2 | 1 |
| Synechococcus sp. WH 8102 | ||
| Gloeobacter violaceus PCC 7421 | ||
| Thermosynechococcus elongatus BP-1 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| rplU |
Gene: SYNPCC7002_A0490: ribosomal protein L21 |
Gene: slr1678: ribosomal protein L21 |
Gene: cce_1391: ribosomal protein L21 |
Gene: PCC8801_3346: ribosomal protein L21 |
Gene: Cyan7425_0646: ribosomal protein L21 |
Gene: MAE_08010: ribosomal protein L21 |
Gene: all0147: ribosomal protein L21 |
Gene: Tery_3243: ribosomal protein L21 |
Gene: Synpcc7942_1219: ribosomal protein L21 |
Gene: PMT1420: ribosomal protein L21 |
*
Synechococcus sp. JA-3-3Ab Site: position = -55 score = 18.87 sequence = ATGCTCGGATCAGGT... Gene: CYA_2052: ribosomal protein L21 |
Gene: SYNW0547: ribosomal protein L21 |
Gene: gvip095: ribosomal protein L21 |
Gene: null: ribosomal protein L21 |
ribosomal protein L21 |
| rpmA |
Gene: SYNPCC7002_A0489: ribosomal protein L27 |
Gene: ssr2799: ribosomal protein L27 |
Gene: cce_1392: ribosomal protein L27 |
Gene: PCC8801_3345: ribosomal protein L27 |
Gene: Cyan7425_0647: ribosomal protein L27 |
Gene: MAE_08020: ribosomal protein L27 |
Gene: asl0146: ribosomal protein L27 |
Gene: Tery_3242: ribosomal protein L27 |
Gene: Synpcc7942_1220: ribosomal protein L27 |
Gene: PMT1421: ribosomal protein L27 |
Gene: CYA_2051: ribosomal protein L27 |
Gene: SYNW0546: ribosomal protein L27 |
Gene: gvip094: ribosomal protein L27 |
Gene: null: ribosomal protein L27 |
ribosomal protein L27 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |