Regulog L21_leader - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | L21_leader |
| RFAM: | RF00559 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - L21_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 1 |
| Bacillus amyloliquefaciens FZB42 | 3 | 1 |
| Bacillus pumilus SAFR-032 | 3 | 1 |
| Bacillus licheniformis DSM 13 | 3 | 1 |
| Anoxybacillus flavithermus WK1 | 3 | 1 |
| Geobacillus kaustophilus HTA426 | 3 | 1 |
| Bacillus cereus ATCC 14579 | 3 | 1 |
| Bacillus halodurans C-125 | 3 | 1 |
| Bacillus clausii KSM-K16 | 3 | 1 |
| Oceanobacillus iheyensis HTE831 | 3 | 1 |
| Paenibacillus sp. JDR-2 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rplU |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -90 score = 57.21 sequence = ACCATTGCTACAACC... Gene: BSU27960: LSU ribosomal protein L21p |
*
Bacillus amyloliquefaciens FZB42 Site: position = -88 score = 56.8 sequence = ACCAATGCTACAACC... Gene: RBAM_025010: LSU ribosomal protein L21p |
*
Bacillus pumilus SAFR-032 Site: position = -86 score = 55.84 sequence = ACCCGTGCTACAACC... Gene: BPUM_2436: LSU ribosomal protein L21p |
*
Bacillus licheniformis DSM 13 Site: position = -88 score = 61.95 sequence = ACCCGTGCTACAACC... Gene: BLi02923: LSU ribosomal protein L21p |
*
Anoxybacillus flavithermus WK1 Site: position = -41 score = 56.69 sequence = CCGTGCTACAACCGC... Gene: Aflv_0694: LSU ribosomal protein L21p |
*
Geobacillus kaustophilus HTA426 Site: position = -95 score = 53.85 sequence = ACCCGCACTACAACC... Gene: GK2610: LSU ribosomal protein L21p |
*
Bacillus cereus ATCC 14579 Site: position = -93 score = 58.1 sequence = CTATATGCTACAACC... Gene: BC4438: LSU ribosomal protein L21p |
*
Bacillus halodurans C-125 Site: position = -86 score = 64.14 sequence = CCAATGACTACAACC... Gene: BH3011: LSU ribosomal protein L21p |
*
Bacillus clausii KSM-K16 Site: position = -87 score = 51.9 sequence = AATGAACTTACAACC... Gene: ABC2602: LSU ribosomal protein L21p |
*
Oceanobacillus iheyensis HTE831 Site: position = -137 score = 35.75 sequence = GCCCGTGCTACAACC... Gene: OB2046: LSU ribosomal protein L21p |
*
Paenibacillus sp. JDR-2 Site: position = -97 score = 33.75 sequence = GGACATGCATGAACC... Gene: Pjdr2_4413: LSU ribosomal protein L21p |
LSU ribosomal protein L21p |
| ysxB |
Gene: BSU27950: FIG139598: Potential ribosomal protein |
Gene: RBAM_025000: FIG139598: Potential ribosomal protein |
Gene: BPUM_2435: FIG139598: Potential ribosomal protein |
Gene: BLi02922: FIG139598: Potential ribosomal protein |
Gene: Aflv_0695: FIG139598: Potential ribosomal protein |
Gene: GK2609: FIG139598: Potential ribosomal protein |
Gene: BC4437: FIG139598: Potential ribosomal protein |
Gene: BH3010: FIG139598: Potential ribosomal protein |
Gene: ABC2601: FIG139598: Potential ribosomal protein |
Gene: OB2045: FIG139598: Potential ribosomal protein |
Gene: Pjdr2_4412: FIG139598: Potential ribosomal protein |
FIG139598: Potential ribosomal protein |
| rpmA |
Gene: BSU27940: LSU ribosomal protein L27p |
Gene: RBAM_024990: LSU ribosomal protein L27p |
Gene: BPUM_2434: LSU ribosomal protein L27p |
Gene: BLi02921: LSU ribosomal protein L27p |
Gene: Aflv_0696: LSU ribosomal protein L27p |
Gene: GK2608: LSU ribosomal protein L27p |
Gene: BC4436: LSU ribosomal protein L27p |
Gene: BH3009: LSU ribosomal protein L27p |
Gene: ABC2600: LSU ribosomal protein L27p |
Gene: OB2044: LSU ribosomal protein L27p |
Gene: Pjdr2_4411: LSU ribosomal protein L27p |
LSU ribosomal protein L27p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |