Regulog L20_leader - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | L20_leader |
| RFAM: | RF00558 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - L20_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 3 | 1 |
| Staphylococcus capitis SK14 | 3 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 3 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 3 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 3 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 3 | 1 |
| Macrococcus caseolyticus JCSC5402 | 3 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| infC |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -164 score = 86.03 sequence = ACGAACCAAGTAGAA... Gene: SA1504: Translation initiation factor 3 |
*
Staphylococcus capitis SK14 Site: position = -150 score = 81.61 sequence = GAACCAAGTAGAAGC... Gene: STACA0001_2347: Translation initiation factor 3 |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -151 score = 79.25 sequence = ACGAACCAAGTAGAA... Gene: SE1355: Translation initiation factor 3 |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -163 score = 74.02 sequence = ACGAACCAAGTAGAA... Gene: Sca_1286: Translation initiation factor 3 |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -83 score = 79.77 sequence = GTACCAAGTAGAAAC... Gene: SH1245: Translation initiation factor 3 |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -152 score = 86.2 sequence = GAACCAAGTAGAAGC... Gene: SSP1084: Translation initiation factor 3 |
*
Macrococcus caseolyticus JCSC5402 Site: position = -144 score = 69.56 sequence = AACGGACAAGTAGAA... Gene: MCCL_1345: Translation initiation factor 3 |
Translation initiation factor 3 |
| rpmI |
Gene: SA1503: LSU ribosomal protein L35p |
Gene: STACA0001_2348: LSU ribosomal protein L35p |
Gene: SE1354: LSU ribosomal protein L35p |
Gene: Sca_1285: LSU ribosomal protein L35p |
Gene: SH1246: LSU ribosomal protein L35p |
Gene: SSP1085: LSU ribosomal protein L35p |
Gene: MCCL_1344: LSU ribosomal protein L35p |
LSU ribosomal protein L35p |
| rplT |
Gene: SA1502: LSU ribosomal protein L20p |
Gene: STACA0001_2349: LSU ribosomal protein L20p |
Gene: SE1353: LSU ribosomal protein L20p |
Gene: Sca_1284: LSU ribosomal protein L20p |
Gene: SH1247: LSU ribosomal protein L20p |
Gene: SSP1086: LSU ribosomal protein L20p |
Gene: MCCL_1343: LSU ribosomal protein L20p |
LSU ribosomal protein L20p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |