Regulog L20_leader - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	L20_leader
RFAM:	RF00558
Regulation mode:
Biological process:	Ribosome biogenesis
Effector:
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - L20_leader
By pathway - Ribosome biogenesis

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	3	1
Staphylococcus capitis SK14	3	1
Staphylococcus epidermidis ATCC 12228	3	1
Staphylococcus carnosus subsp. carnosus TM300	3	1
Staphylococcus haemolyticus JCSC1435	3	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	3	1
Macrococcus caseolyticus JCSC5402	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
infC	* Staphylococcus aureus subsp. aureus N315 Site: position = -164 score = 86.03 sequence = ACGAACCAAGTAGAA... Gene: SA1504: Translation initiation factor 3	* Staphylococcus capitis SK14 Site: position = -150 score = 81.61 sequence = GAACCAAGTAGAAGC... Gene: STACA0001_2347: Translation initiation factor 3	* Staphylococcus epidermidis ATCC 12228 Site: position = -151 score = 79.25 sequence = ACGAACCAAGTAGAA... Gene: SE1355: Translation initiation factor 3	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -163 score = 74.02 sequence = ACGAACCAAGTAGAA... Gene: Sca_1286: Translation initiation factor 3	* Staphylococcus haemolyticus JCSC1435 Site: position = -83 score = 79.77 sequence = GTACCAAGTAGAAAC... Gene: SH1245: Translation initiation factor 3	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -152 score = 86.2 sequence = GAACCAAGTAGAAGC... Gene: SSP1084: Translation initiation factor 3	* Macrococcus caseolyticus JCSC5402 Site: position = -144 score = 69.56 sequence = AACGGACAAGTAGAA... Gene: MCCL_1345: Translation initiation factor 3	Translation initiation factor 3
rpmI	Staphylococcus aureus subsp. aureus N315 Gene: SA1503: LSU ribosomal protein L35p	Staphylococcus capitis SK14 Gene: STACA0001_2348: LSU ribosomal protein L35p	Staphylococcus epidermidis ATCC 12228 Gene: SE1354: LSU ribosomal protein L35p	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1285: LSU ribosomal protein L35p	Staphylococcus haemolyticus JCSC1435 Gene: SH1246: LSU ribosomal protein L35p	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1085: LSU ribosomal protein L35p	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1344: LSU ribosomal protein L35p	LSU ribosomal protein L35p
rplT	Staphylococcus aureus subsp. aureus N315 Gene: SA1502: LSU ribosomal protein L20p	Staphylococcus capitis SK14 Gene: STACA0001_2349: LSU ribosomal protein L20p	Staphylococcus epidermidis ATCC 12228 Gene: SE1353: LSU ribosomal protein L20p	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1284: LSU ribosomal protein L20p	Staphylococcus haemolyticus JCSC1435 Gene: SH1247: LSU ribosomal protein L20p	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1086: LSU ribosomal protein L20p	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1343: LSU ribosomal protein L20p	LSU ribosomal protein L20p

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog L20_leader - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --