Regulog L19_leader - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | L19_leader |
| RFAM: | RF00556 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - L19_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 1 | 1 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 1 | 1 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 1 | 1 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rplS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -51 score = 42.44 sequence = CGATGTTCCGCTGTG... Gene: BSU16040: LSU ribosomal protein L19p |
*
Bacillus amyloliquefaciens FZB42 Site: position = -61 score = 39.29 sequence = CGATGTTCCGCTGTG... Gene: RBAM_015870: LSU ribosomal protein L19p |
*
Bacillus pumilus SAFR-032 Site: position = -60 score = 33.16 sequence = CGATGTTCCGCTGCA... Gene: BPUM_1502: LSU ribosomal protein L19p |
*
Bacillus licheniformis DSM 13 Site: position = -60 score = 43.73 sequence = CGATGTTCCGCTGTG... Gene: BLi01824: LSU ribosomal protein L19p |
*
Anoxybacillus flavithermus WK1 Site: position = -36 score = 35.88 sequence = AACGATGTTCCGCTG... Gene: Aflv_1759: LSU ribosomal protein L19p |
*
Geobacillus kaustophilus HTA426 Site: position = -58 score = 43.04 sequence = CGATGTTCCGCTGCA... Gene: GK1202: LSU ribosomal protein L19p |
*
Bacillus cereus ATCC 14579 Site: position = -65 score = 40.06 sequence = AACGATGTTCCGCTG... Gene: BC3838: LSU ribosomal protein L19p |
*
Bacillus halodurans C-125 Site: position = -66 score = 46.36 sequence = TACGATGTTCCGCTG... Gene: BH2478: LSU ribosomal protein L19p |
*
Bacillus clausii KSM-K16 Site: position = -61 score = 39.32 sequence = TACGATATTCCGCTG... Gene: ABC2287: LSU ribosomal protein L19p |
*
Oceanobacillus iheyensis HTE831 Site: position = -57 score = 37.85 sequence = CGATGTTCCGCTGTC... Gene: OB1537: LSU ribosomal protein L19p |
Gene: Pjdr2_3477: LSU ribosomal protein L19p |
LSU ribosomal protein L19p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |