Regulog L13_leader - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | L13_leader |
| RFAM: | RF00555 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - L13_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 2 | 1 |
| Staphylococcus capitis SK14 | 2 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 2 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 2 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 2 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 2 | 1 |
| Macrococcus caseolyticus JCSC5402 | 2 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| rplM |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -198 score = 57.0 sequence = CGGTATTGTTTTATA... Gene: SA2017: LSU ribosomal protein L13p (L13Ae) |
*
Staphylococcus capitis SK14 Site: position = -211 score = 55.05 sequence = GTTTTATATCACCCC... Gene: STACA0001_1277: LSU ribosomal protein L13p (L13Ae) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -214 score = 55.9 sequence = TTGTTTTATATCACC... Gene: SE1791: LSU ribosomal protein L13p (L13Ae) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -173 score = 52.06 sequence = CGGTATTGTTTTATA... Gene: Sca_1703: LSU ribosomal protein L13p (L13Ae) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -209 score = 51.61 sequence = GTATTGTTTTATATC... Gene: SH0835: LSU ribosomal protein L13p (L13Ae) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -161 score = 50.17 sequence = GTATTGTTTTATATC... Gene: SSP0695: LSU ribosomal protein L13p (L13Ae) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -106 score = 41.35 sequence = GTATTGTTTAATATC... Gene: MCCL_0227: LSU ribosomal protein L13p (L13Ae) |
LSU ribosomal protein L13p (L13Ae) |
| rpsI |
Gene: SA2016: SSU ribosomal protein S9p (S16e) |
Gene: STACA0001_1278: SSU ribosomal protein S9p (S16e) |
Gene: SE1790: SSU ribosomal protein S9p (S16e) |
Gene: Sca_1702: SSU ribosomal protein S9p (S16e) |
Gene: SH0836: SSU ribosomal protein S9p (S16e) |
Gene: SSP0696: SSU ribosomal protein S9p (S16e) |
Gene: MCCL_0228: SSU ribosomal protein S9p (S16e) |
SSU ribosomal protein S9p (S16e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |