Regulog L10_leader - Cyanobacteria
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Synechococcus sp. PCC 7002 | 2 | 1 |
| Synechocystis sp. PCC 6803 | 2 | 1 |
| Cyanothece sp. ATCC 51142 | 2 | 1 |
| Cyanothece sp. PCC 8801 | 2 | 1 |
| Cyanothece sp. PCC 7425 | 2 | 1 |
| Microcystis aeruginosa NIES-843 | 1 | 1 |
| Nostoc sp. PCC 7120 | 2 | 1 |
| Trichodesmium erythraeum IMS101 | ||
| Synechococcus elongatus PCC 7942 | 2 | 1 |
| Prochlorococcus marinus str. MIT 9313 | ||
| Synechococcus sp. JA-3-3Ab | 2 | 1 |
| Synechococcus sp. WH 8102 | ||
| Gloeobacter violaceus PCC 7421 | 2 | 1 |
| Thermosynechococcus elongatus BP-1 | 2 | 1 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| rplJ |
*
Synechococcus sp. PCC 7002 Site: position = -193 score = 62.39 sequence = TAAATAGATTTTATT... Gene: SYNPCC7002_A1027: 50S ribosomal protein L10 |
*
Synechocystis sp. PCC 6803 Site: position = -213 score = 66.46 sequence = ATTTATTTAACTGGC... Gene: sll1745: 50S ribosomal protein L10 |
*
Cyanothece sp. ATCC 51142 Site: position = -196 score = 69.21 sequence = AAATAAACTTTGGTT... Gene: cce_0224: 50S ribosomal protein L10 |
*
Cyanothece sp. PCC 8801 Site: position = -216 score = 49.12 sequence = AATGCTTGTTTGGCT... Gene: PCC8801_1738: 50S ribosomal protein L10 |
*
Cyanothece sp. PCC 7425 Site: position = -200 score = 61.57 sequence = ACACAACTGAATCAA... Gene: Cyan7425_4011: 50S ribosomal protein L10 |
*
Microcystis aeruginosa NIES-843 Site: position = -215 score = 43.36 sequence = TGAGGGACTGGCTTA... Gene: MAE_43870: 50S ribosomal protein L10 |
*
Nostoc sp. PCC 7120 Site: position = -225 score = 73.45 sequence = AAACTAAATATGCAA... Gene: alr5302: 50S ribosomal protein L10 |
Gene: Tery_0263: 50S ribosomal protein L10 |
*
Synechococcus elongatus PCC 7942 Site: position = -183 score = 69.55 sequence = TTGTAACTAAATAGC... Gene: Synpcc7942_0632: 50S ribosomal protein L10 |
Gene: PMT2090: 50S ribosomal protein L10 |
*
Synechococcus sp. JA-3-3Ab Site: position = -228 score = 60.5 sequence = CACAGTCGAATAGCG... Gene: CYA_1782: 50S ribosomal protein L10 |
Gene: SYNW2341: 50S ribosomal protein L10 |
*
Gloeobacter violaceus PCC 7421 Site: position = -160 score = 65.87 sequence = TTCAACCGAATCCGC... Gene: gvip225: 50S ribosomal protein L10 |
*
Thermosynechococcus elongatus BP-1 Site: position = -150 score = 59.98 sequence = ACAACTCAAGACTAA... Gene: tlr0297: 50S ribosomal protein L10 |
50S ribosomal protein L10 |
| rplL |
Gene: SYNPCC7002_A1026: ribosomal protein L7/L12 |
Gene: sll1746: ribosomal protein L7/L12 |
Gene: cce_0223: ribosomal protein L7/L12 |
Gene: PCC8801_1737: ribosomal protein L7/L12 |
Gene: Cyan7425_4010: ribosomal protein L7/L12 |
|
Gene: alr5303: ribosomal protein L7/L12 |
Gene: Tery_0262: ribosomal protein L7/L12 |
Gene: Synpcc7942_0631: ribosomal protein L7/L12 |
Gene: PMT2091: ribosomal protein L7/L12 |
Gene: CYA_1784: ribosomal protein L7/L12 |
Gene: SYNW2340: ribosomal protein L7/L12 |
Gene: gvip226: ribosomal protein L7/L12 |
Gene: null: ribosomal protein L7/L12 |
ribosomal protein L7/L12 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |