Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ykkC-yxkD - Ralstonia

Properties
Regulator type: RNA regulatory element
Name: ykkC-yxkD
RFAM: RF00442
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000
Ralstonia pickettii 12J
Ralstonia metallidurans CH34
Ralstonia eutropha JMP134 8 2
Ralstonia eutropha H16
Cupriavidus taiwanensis
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Reut_B3481
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
*
Ralstonia eutropha JMP134

Site:
position = -170
score = 73.97
sequence = ACCGAAGGGTAGCTA...

Gene: Reut_B3481: Hypothetical protein
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Hypothetical protein
 
CRON 2.
uctB
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
*
Ralstonia eutropha JMP134

Site:
position = -175
score = 76.16
sequence = ACCGAAGGGTCGCTA...

Gene: Reut_B4888: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
uctP
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B4887: Urea carboxylase-related ABC transporter, permease protein
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Urea carboxylase-related ABC transporter, permease protein
uctA
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B4886: Urea carboxylase-related ABC transporter, ATPase protein
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Urea carboxylase-related ABC transporter, ATPase protein
amt1
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B4885: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B4884: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B4883: Urea carboxylase (EC 6.3.4.6)
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Urea carboxylase (EC 6.3.4.6)
ucaB
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B4882: Allophanate hydrolase (EC 3.5.1.54)
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Allophanate hydrolase (EC 3.5.1.54)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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