Regulog ykkC-yxkD - Ralstonia

Properties
Regulator type:	RNA regulatory element
Name:	ykkC-yxkD
RFAM:	RF00442
Regulation mode:
Biological process:	Multidrug resistance
Effector:
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Ralstonia
By RNA motif - ykkC-yxkD
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000
Ralstonia pickettii 12J
Ralstonia metallidurans CH34
Ralstonia eutropha JMP134	8	2
Ralstonia eutropha H16
Cupriavidus taiwanensis

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
Reut_B3481	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	* Ralstonia eutropha JMP134 Site: position = -170 score = 73.97 sequence = ACCGAAGGGTAGCTA... Gene: Reut_B3481: Hypothetical protein	Ralstonia eutropha H16	Cupriavidus taiwanensis	Hypothetical protein

CRON 2.
uctB	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	* Ralstonia eutropha JMP134 Site: position = -175 score = 76.16 sequence = ACCGAAGGGTCGCTA... Gene: Reut_B4888: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Ralstonia eutropha H16	Cupriavidus taiwanensis	Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
uctP	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B4887: Urea carboxylase-related ABC transporter, permease protein	Ralstonia eutropha H16	Cupriavidus taiwanensis	Urea carboxylase-related ABC transporter, permease protein
uctA	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B4886: Urea carboxylase-related ABC transporter, ATPase protein	Ralstonia eutropha H16	Cupriavidus taiwanensis	Urea carboxylase-related ABC transporter, ATPase protein
amt1	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B4885: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Ralstonia eutropha H16	Cupriavidus taiwanensis	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B4884: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Ralstonia eutropha H16	Cupriavidus taiwanensis	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B4883: Urea carboxylase (EC 6.3.4.6)	Ralstonia eutropha H16	Cupriavidus taiwanensis	Urea carboxylase (EC 6.3.4.6)
ucaB	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B4882: Allophanate hydrolase (EC 3.5.1.54)	Ralstonia eutropha H16	Cupriavidus taiwanensis	Allophanate hydrolase (EC 3.5.1.54)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ykkC-yxkD - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --