Regulog ykkC-yxkD - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	ykkC-yxkD
RFAM:	RF00442
Regulation mode:
Biological process:	Multidrug resistance
Effector:
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - ykkC-yxkD
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315
Staphylococcus capitis SK14
Staphylococcus epidermidis ATCC 12228
Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	2	1
Macrococcus caseolyticus JCSC5402

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
ykkC	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14 Gene: STACA0001_1189: Quaternary ammonium compound-resistance protein sugE	Staphylococcus epidermidis ATCC 12228 Gene: SE1877: Quaternary ammonium compound-resistance protein sugE	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1795: Quaternary ammonium compound-resistance protein sugE	Staphylococcus haemolyticus JCSC1435 Gene: SH0754: Quaternary ammonium compound-resistance protein sugE	2 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305* Gene: SSP0608: Quaternary ammonium compound-resistance protein sugE Site: position = -253 score = 88.2 sequence = GAATAAAGCTTTCTA... Gene: SSP2343: Quaternary ammonium compound-resistance protein sugE	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1353: Quaternary ammonium compound-resistance protein sugE	Quaternary ammonium compound-resistance protein sugE
ykkD	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14 Gene: STACA0001_1188: Quaternary ammonium compound-resistance protein sugE	Staphylococcus epidermidis ATCC 12228 Gene: SE1878: Quaternary ammonium compound-resistance protein sugE	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1796: Quaternary ammonium compound-resistance protein sugE	Staphylococcus haemolyticus JCSC1435 Gene: SH0753: Quaternary ammonium compound-resistance protein sugE	2 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP2342: Quaternary ammonium compound-resistance protein sugE Gene: SSP0607: Quaternary ammonium compound-resistance protein sugE	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1352: Quaternary ammonium compound-resistance protein sugE	Quaternary ammonium compound-resistance protein sugE

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ykkC-yxkD - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --