Regulog ydaO-yuaA - Cyanobacteria

Properties
Regulator type:	RNA regulatory element
Name:	ydaO-yuaA
RFAM:	RF00379
Regulation mode:
Biological process:	Cell wall metabolism; Osmotic stress response
Effector:
Phylum:	Cyanobacteria

Member of regulog collections

By taxonomy - Cyanobacteria
By RNA motif - ydaO-yuaA
By pathway - Cell wall metabolism
By pathway - Osmotic stress response

Statistics of regulated genes
Genome	Genes	Operons
Synechococcus sp. PCC 7002	3	1
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801	3	1
Cyanothece sp. PCC 7425	2	2
Microcystis aeruginosa NIES-843	1	1
Nostoc sp. PCC 7120	4	3
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421
Thermosynechococcus elongatus BP-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
tauC	* Synechococcus sp. PCC 7002 Site: position = -262 score = 56.25 sequence = CTGAGTAAGTCAGCT... Gene: SYNPCC7002_G0016: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	* Cyanothece sp. PCC 8801 Site: position = -268 score = 70.44 sequence = GAGTAAGTCAGCTTA... Gene: PCC8801_3675: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -322 score = 63.75 sequence = TCGAGTAAGTCAGCC... Gene: all3036: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
tauA	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_G0015: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801 Gene: PCC8801_3676: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421 Gene: gll3956: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein	Thermosynechococcus elongatus BP-1	ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein
tauB	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_G0014: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801 Gene: PCC8801_3677: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120 Gene: all3035: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421 Gene: gvip217: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein	Thermosynechococcus elongatus BP-1	ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein

CRON 2.
PF00582	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	2 Cyanothece sp. PCC 7425* Site: position = -264 score = 54.48 sequence = TCGAACAAGTCAGCC... Gene: Cyan7425_4306: Hypothetical protein Gene: Cyan7425_1659: Hypothetical protein	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -273 score = 47.76 sequence = CTTTAGTGGGTAGCC... Gene: all3034: Hypothetical protein	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Hypothetical protein
COG1055	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803 Gene: slr0753: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	Cyanothece sp. ATCC 51142 Gene: cce_0065: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	Cyanothece sp. PCC 8801 Gene: PCC8801_2811: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	* Cyanothece sp. PCC 7425 Site: position = -280 score = 65.79 sequence = TAATCCGTCAGCCTA... Gene: Cyan7425_5261: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	* Microcystis aeruginosa NIES-843 Site: position = -397 score = 66.57 sequence = CAGAGTAAGTCAGCC... Gene: MAE_59110: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	Nostoc sp. PCC 7120 Gene: all3033: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_0041: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Na+/H+ antiporter NhaD and related arsenite permeases, COG1055

CRON 3.
COG0438	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -289 score = 73.01 sequence = AAATCAGTCAGCCTA... Gene: alr3370: Glycosyltransferase (EC 2.4.1.-)	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Glycosyltransferase (EC 2.4.1.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ydaO-yuaA - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --