Regulog ydaO-yuaA - Cyanobacteria
| Regulator type: | RNA regulatory element |
| Name: | ydaO-yuaA |
| RFAM: | RF00379 |
| Regulation mode: | |
| Biological process: | Cell wall metabolism; Osmotic stress response |
| Effector: | |
| Phylum: | Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By RNA motif - ydaO-yuaA
- By pathway - Cell wall metabolism
- By pathway - Osmotic stress response
| Genome | Genes | Operons |
|---|---|---|
| Synechococcus sp. PCC 7002 | 3 | 1 |
| Synechocystis sp. PCC 6803 | ||
| Cyanothece sp. ATCC 51142 | ||
| Cyanothece sp. PCC 8801 | 3 | 1 |
| Cyanothece sp. PCC 7425 | 2 | 2 |
| Microcystis aeruginosa NIES-843 | 1 | 1 |
| Nostoc sp. PCC 7120 | 4 | 3 |
| Trichodesmium erythraeum IMS101 | ||
| Synechococcus elongatus PCC 7942 | ||
| Prochlorococcus marinus str. MIT 9313 | ||
| Synechococcus sp. JA-3-3Ab | ||
| Synechococcus sp. WH 8102 | ||
| Gloeobacter violaceus PCC 7421 | ||
| Thermosynechococcus elongatus BP-1 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| tauC |
*
Synechococcus sp. PCC 7002 Site: position = -262 score = 56.25 sequence = CTGAGTAAGTCAGCT... Gene: SYNPCC7002_G0016: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
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Cyanothece sp. PCC 8801 Site: position = -268 score = 70.44 sequence = GAGTAAGTCAGCTTA... Gene: PCC8801_3675: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
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Nostoc sp. PCC 7120 Site: position = -322 score = 63.75 sequence = TCGAGTAAGTCAGCC... Gene: all3036: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
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ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
| tauA |
Gene: SYNPCC7002_G0015: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein |
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Gene: PCC8801_3676: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein |
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Gene: gll3956: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein |
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ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein |
| tauB |
Gene: SYNPCC7002_G0014: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein |
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Gene: PCC8801_3677: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein |
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Gene: all3035: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein |
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Gene: gvip217: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein |
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ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein |
| CRON 2. | |||||||||||||||
| PF00582 |
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*2
Cyanothece sp. PCC 7425 Site: position = -264 score = 54.48 sequence = TCGAACAAGTCAGCC... Gene: Cyan7425_4306: Hypothetical protein Gene: Cyan7425_1659: Hypothetical protein |
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Nostoc sp. PCC 7120 Site: position = -273 score = 47.76 sequence = CTTTAGTGGGTAGCC... Gene: all3034: Hypothetical protein |
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Hypothetical protein |
| COG1055 |
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Gene: slr0753: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
Gene: cce_0065: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
Gene: PCC8801_2811: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
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Cyanothece sp. PCC 7425 Site: position = -280 score = 65.79 sequence = TAATCCGTCAGCCTA... Gene: Cyan7425_5261: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
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Microcystis aeruginosa NIES-843 Site: position = -397 score = 66.57 sequence = CAGAGTAAGTCAGCC... Gene: MAE_59110: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
Gene: all3033: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
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Gene: Synpcc7942_0041: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
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Na+/H+ antiporter NhaD and related arsenite permeases, COG1055 |
| CRON 3. | |||||||||||||||
| COG0438 |
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Nostoc sp. PCC 7120 Site: position = -289 score = 73.01 sequence = AAATCAGTCAGCCTA... Gene: alr3370: Glycosyltransferase (EC 2.4.1.-) |
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Glycosyltransferase (EC 2.4.1.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |