Regulog yybP-ykoY - Cyanobacteria

Properties
Regulator type:	RNA regulatory element
Name:	yybP-ykoY
RFAM:	RF00080
Regulation mode:
Biological process:
Effector:
Phylum:	Cyanobacteria

Member of regulog collections

By taxonomy - Cyanobacteria
By RNA motif - yybP-ykoY

Statistics of regulated genes
Genome	Genes	Operons
Synechococcus sp. PCC 7002
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7425
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120	1	1
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab	2	2
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421	1	1
Thermosynechococcus elongatus BP-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
COG2119	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803 Gene: sll0615: Transmembrane protein, COG2119	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425 Gene: Cyan7425_1416: Transmembrane protein, COG2119	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -201 score = 48.17 sequence = TCTGATAAGAAGGGG... Gene: alr1698: Transmembrane protein, COG2119	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1990: Transmembrane protein, COG2119	Prochlorococcus marinus str. MIT 9313	2 Synechococcus sp. JA-3-3Ab* Site: position = -227 score = 57.86 sequence = ATTCAGGCTAGAAAG... Gene: CYA_0706: Transmembrane protein, COG2119 Site: position = -227 score = 58.93 sequence = CATTCAGACGGAAAG... Gene: CYA_0678: Transmembrane protein, COG2119	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1 Gene: tlr0379: Transmembrane protein, COG2119	Transmembrane protein, COG2119

CRON 2.
ykoY	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	* Gloeobacter violaceus PCC 7421 Site: position = -125 score = 52.64 sequence = TAGAGATGGATGGGG... Gene: glr4409: Membrane protein TerC, possibly involved in tellurium resistance	Thermosynechococcus elongatus BP-1	Membrane protein TerC, possibly involved in tellurium resistance

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog yybP-ykoY - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --